FastQCFastQC Report
Sat 31 Dec 2022
SRR5843595.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843595.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45362
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATACTGGGGCAGTGGGTGGTGTATGCTGTGCGAAATCTCACTGAA530.1168378819276046No Hit
TAGTAAGGGGACGAATCCTTGAAAGGTACAACTTGAGGGAAGATTT490.10801992857457784No Hit
AGATAAGGGACCATCTTGGCACTGGAGACTTGAGAGATTAACAGTG480.10581544023632115No Hit
CGCAAGGGGGGCTATTACCTCATTCCTTTCACTGGGATTGTAGGAT480.10581544023632115No Hit
GAGCGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGCCC470.10361095189806446No Hit
CTATGAGGGACTACAGTCCAGTGTACCGCAGCCCAAACCACGGGAC460.10140646355980777No Hit
GGATCTGGGGTCAACGGCATCCGTCGCGTCATCGCCAACCAGCAGC460.10140646355980777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)