FastQCFastQC Report
Sat 31 Dec 2022
SRR5843592.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843592.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74362
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA990.13313251391839917No Hit
GTAATTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG930.12506387671122346No Hit
CACAAAGGGGGGCCATTGGCCTCTCTGTGGCAGACTTGGCTGAGAG870.11699523950404776No Hit
CTCGTAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA860.11565046663618515No Hit
ACTCGGGGATGCAGATAAAATTCCATTTCACCCCTACTATACAATC850.11430569376832253No Hit
TCGTAAGGGATAGCTTGGAATTTGAGACTGAGCAGTGCAAGGCATT840.11296092090045992No Hit
TTCGTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC800.10758182942900943No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)