FastQCFastQC Report
Sat 31 Dec 2022
SRR5843590.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843590.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39436
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA710.18003854346282583No Hit
AACTATGGGGCAGAGAACACTTTCCAACAGTTTGAGCCTTAAGCCA680.17243128106298813No Hit
TCGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC640.1622882645298712No Hit
AAAATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.149609493863475No Hit
TTGCTCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA580.14707373973019575No Hit
TTTATTGGGCTCATAGAGGGGGGAATTCTGGACATTAATTAGGGCT570.14453798559691652No Hit
GCTGATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC560.1420022314636373No Hit
TGCCTAGGGGACAGAACGAGGGGACGTAACGGAGGCAGGTTGGAGC560.1420022314636373No Hit
TTTAGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA560.1420022314636373No Hit
ACTATGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCAC540.1369307231970788No Hit
TTACTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.1369307231970788No Hit
ACTCGCGGGATGGCACACATTGGTCATCCCAGACCTGGGGAGGCAG510.1293234607972411No Hit
GAACGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.1293234607972411No Hit
CACGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.1293234607972411No Hit
ACTTTAGGGGGATGATTCTTTGAGCATAGTTCTTTTTGAAAACAAG510.1293234607972411No Hit
TAGCAAGGGTAAGAAGCAAACGGGAGCAGGGAAGGCTTGCCACACA500.12678770666396186No Hit
TCAATAGGGTATTGCTGTGCTAATCATTGTTTTTATTCTTTGGGAC500.12678770666396186No Hit
TCCTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.12678770666396186No Hit
CAATGAAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.12425195253068264No Hit
TTTTTTGGGGGGGCCAGACTTCGACGGAGCTGCCTGGGATGCTGGA490.12425195253068264No Hit
CTGTCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.12425195253068264No Hit
TGACAGAGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG490.12425195253068264No Hit
TTGCTCGGGGGCTGGAGTGAACTATTTTTTGGATGTGGAGATGGGC490.12425195253068264No Hit
TTTTTCGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG480.12171619839740339No Hit
GCTTACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA480.12171619839740339No Hit
TTTGTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.12171619839740339No Hit
TTTACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.11918044426412415No Hit
TGAGTGGGGGGCGGCCATCGGTGGATCGCAGCCGCCAAAATGAAGT470.11918044426412415No Hit
AGCATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.11918044426412415No Hit
CAAACTAGGACAGTCAGGTGCTTCTGAGTTAAAAGGCCCAAGATTC460.11664469013084491No Hit
CTCCCTGGGGAACTAAAATTAGTATTACTTAAACATTGTAGTACCA460.11664469013084491No Hit
TTCCTGGGGGGAGGTCGAGCCCAGTGACACCATAGAGAATGTCAAG460.11664469013084491No Hit
CCTCAAGGGGTCCATGACCATTAACTGGAGCCTTTTCAGCCCTCCT460.11664469013084491No Hit
TACGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.11664469013084491No Hit
CCTTAAGGGCTCCCAGGAGTCTGTATGCTCCTGAATATCTGGAATC460.11664469013084491No Hit
TAGCATAGGGGGCGGTAAAAGGGGTTTACCTCTCACCTTTGGTCAT460.11664469013084491No Hit
TATCTAGGGGACTACCATCAGCAATAGAAGGCCCTACACCAGTTTC460.11664469013084491No Hit
AGCCTAGGGGAGCGCATGGTCCAAGAAGCTGAGAAGTACAAGGCTG460.11664469013084491No Hit
ATCGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.11664469013084491No Hit
CACTTCGGGGCGTCTTTGCGTTCGCCAGCGGGCGCGAAGCTGTCCG450.11410893599756568No Hit
TCTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.11410893599756568No Hit
AATCCTGGGTGGTTCAAATTATTATAAAGGAAAGACCCTCTGAGTA450.11410893599756568No Hit
CTTAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.11410893599756568No Hit
GCTCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.11157318186428644No Hit
CGATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.11157318186428644No Hit
TCTTCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA440.11157318186428644No Hit
TTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC440.11157318186428644No Hit
CCATCCGGGCACACTAACCTCGGTGGAAAAATAACCATTCCCTGCC440.11157318186428644No Hit
TGCCATGGGGGATCACTGTCTCTGGGGCACCCTTTTGGAGCCACTG440.11157318186428644No Hit
TGTTTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC430.1090374277310072No Hit
ACCTTGGGGGACCTCTGAGGAGCCGGTGACGGGTTGGCGTGCGAGT430.1090374277310072No Hit
GTTAACGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC430.1090374277310072No Hit
GTTAGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.1090374277310072No Hit
TCATAGAGGGCAGGCATTGGCATGACCAAGGCTGACCTCATTAATA430.1090374277310072No Hit
CTCCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.1090374277310072No Hit
GCACACACACACACAAACACAGAGAGAGATACAGATACACACACAC430.1090374277310072No Hit
TAACTGGGGTATGCCACAACTAGATACATCAACATGATTTATCACA430.1090374277310072No Hit
TTGCTAGGGACCGAGAACTGGAGCAGGCCATCCGGGGGGCCGATGC430.1090374277310072No Hit
CATAGGGCAGAAATCTTTTGATTGACTCAAGTAAGTTTTGGCTTCC430.1090374277310072No Hit
TTTAGTGGGACGATGCTGGTGCGTACCCACATGCAGGACCTAAAGG420.10650167359772796No Hit
TAAACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.10650167359772796No Hit
CAATCTGGGATCCCCATGCTATAACAGAATCCATGAAGCATAAGTG420.10650167359772796No Hit
GACCATGGGGATCTCAGTCAGATGAGAAACAGCTTGATCCAGGGCC420.10650167359772796No Hit
ATCCCAGGGACACACACACACTCCACCTTCTTAGATCTTGAAAATC420.10650167359772796No Hit
TATACAGGGGGTTTTTATGTCAACTGCACCTACATGTAATCCATTT420.10650167359772796No Hit
CGTAACGGGTCTCTTTCTGCCATCTTCCCTCGCCGCCACCATGGTG420.10650167359772796No Hit
TTTACCGGGATGCAAACCAAATTCTTTGCCTGTTCCAAACTACAGG420.10650167359772796No Hit
GGTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.10396591946444872No Hit
CGGAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.10396591946444872No Hit
CGCAATGGGGAGGTAAAATTGGATCTTACTTAGATAAAGGAATTCT410.10396591946444872No Hit
ACCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC410.10396591946444872No Hit
CTTTCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.10396591946444872No Hit
GTTGGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.10143016533116948No Hit
GCGTGTGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA400.10143016533116948No Hit
CATCTGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGAC400.10143016533116948No Hit
AAGTCAGGGGGCTTTCGATTTTTGGCGTTCAGTAGTCGCGGTTGGT400.10143016533116948No Hit
ATCTTTGGGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCC400.10143016533116948No Hit
TATACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.10143016533116948No Hit
CATACAGGGCATCACCACCACGGTCCCTGAGGACATCATGTCCAAC400.10143016533116948No Hit
TGCACAGGGGATCACGACCTAGGCCGCGTGCAGATTCCTACATAAA400.10143016533116948No Hit
TACTCGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA400.10143016533116948No Hit
CCATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.10143016533116948No Hit
AATCTCGGGGAGGAAGTGCTCGGGCGTCGCAGGGCCGGAGGCGCGG400.10143016533116948No Hit
TAAATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.10143016533116948No Hit
GTACATGGGGGACACTACACCTACAGCAGCCCCCACTCGGGCAGCA400.10143016533116948No Hit
TTATCAGGGACCAAACACAAATACGAAAAATTATAGCCTATTCATC400.10143016533116948No Hit
ACACGCGGGCAGGTCTGATGGGAAAATCTCAGAACAGTCAGACGCA400.10143016533116948No Hit
AAAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.10143016533116948No Hit
TCTATGGGGTGTGCAGGCTAAAAACAGCAAACATACCATGTCCAGA400.10143016533116948No Hit
TTCAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.10143016533116948No Hit
TCACCTGGGAGCTTAATGCAGAACTCTTTAGAAAGCTCAGATGGAG400.10143016533116948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)