FastQCFastQC Report
Sat 31 Dec 2022
SRR5843589.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843589.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37168
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC660.17757210503659063No Hit
TGCCTAGGGGACAGAACGAGGGGACGTAACGGAGGCAGGTTGGAGC630.16950064571674558No Hit
TTGCTCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA610.1641196728368489No Hit
AGCATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.15604821351700388No Hit
TCTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.15066724063710718No Hit
TTTATTGGGCTCATAGAGGGGGGAATTCTGGACATTAATTAGGGCT550.14797675419715883No Hit
TTTGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.14797675419715883No Hit
ACTATGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCAC540.1452862677572105No Hit
CTTTCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.1452862677572105No Hit
CTTAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.14259578131726214No Hit
ACCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC520.13990529487731382No Hit
CCGTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.13721480843736547No Hit
TCATAGAGGGCAGGCATTGGCATGACCAAGGCTGACCTCATTAATA510.13721480843736547No Hit
ACACGCGGGCAGGTCTGATGGGAAAATCTCAGAACAGTCAGACGCA510.13721480843736547No Hit
CTACCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA500.13452432199741712No Hit
TTACTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.13452432199741712No Hit
CACGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.13452432199741712No Hit
GTTGGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.13183383555746878No Hit
AAAATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.13183383555746878No Hit
GGTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.12914334911752046No Hit
AATCCTGGGTGGTTCAAATTATTATAAAGGAAAGACCCTCTGAGTA480.12914334911752046No Hit
ACTCGCGGGATGGCACACATTGGTCATCCCAGACCTGGGGAGGCAG470.1264528626775721No Hit
CTAAGCGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT470.1264528626775721No Hit
CGATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.12376237623762376No Hit
ACAATAGGGGGGCTTTCGATTTTTGGCGTTCAGTAGTCGCGGTTGG460.12376237623762376No Hit
CATCTGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGAC460.12376237623762376No Hit
CCATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.12376237623762376No Hit
CTCCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.12376237623762376No Hit
GGACCAGGGAGACGGTATCAACAGGAACATCCTCGTGTTAGATATT460.12376237623762376No Hit
GCTCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.12107188979767541No Hit
ATTTCTGGGACCCATAAAATCTCTCAACCTAAGCCTAAAAACATCC450.12107188979767541No Hit
GACCATGGGGATCTCAGTCAGATGAGAAACAGCTTGATCCAGGGCC450.12107188979767541No Hit
TCATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.12107188979767541No Hit
TATACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.11838140335772708No Hit
GACTTAGGGGGATTGCTCCTGCTTCTGAGCTTGCTCCCGCGCATTC440.11838140335772708No Hit
TTTGTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.11838140335772708No Hit
GTAATTGGGGTCGAGATGAAACCCGCAGTGGATGAGATGTTCCCCG430.11569091691777872No Hit
ATTAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.11569091691777872No Hit
AGCCTAGGGGAGCGCATGGTCCAAGAAGCTGAGAAGTACAAGGCTG430.11569091691777872No Hit
TAATTTGGGGAGCAAATGGCTGCTCTTCGCATGCTGTGGATGGGTT430.11569091691777872No Hit
CATAGGGCAGAAATCTTTTGATTGACTCAAGTAAGTTTTGGCTTCC430.11569091691777872No Hit
ACTAGTGGGGACCACCTGAAACGGGCATCGTCGCTCTTCGTTGTTC420.1130004304778304No Hit
CAAGCTGGGATGGCCCAAAAACTATAGTATAAGTTTGAAATTTCGG420.1130004304778304No Hit
ACTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.1130004304778304No Hit
CTTCACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.1130004304778304No Hit
GCTTTAGGGATGCACTGCGTTCACCCACGTACAGCTGGGATGAGAA420.1130004304778304No Hit
ATCCCAGGGACACACACACACTCCACCTTCTTAGATCTTGAAAATC410.11030994403788204No Hit
CATTTTGGGGGGAGGTATCCCAATAGGAGGTTTCCTCCTATGGTTT410.11030994403788204No Hit
TTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC410.11030994403788204No Hit
TACTCGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA410.11030994403788204No Hit
GGGCGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA410.11030994403788204No Hit
CGCAATGGGGAGGTAAAATTGGATCTTACTTAGATAAAGGAATTCT410.11030994403788204No Hit
TGACAGAGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG410.11030994403788204No Hit
CTAGTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA410.11030994403788204No Hit
TTTGCAGGGTAACCGGAATTGTTTTATCCAACTCATCCCTTGACAT410.11030994403788204No Hit
ATCGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.11030994403788204No Hit
CTCCCTGGGGAACTAAAATTAGTATTACTTAAACATTGTAGTACCA400.1076194575979337No Hit
ACCACGAAGGGAACCCCTGCCATCTCGCAGAGATGTTTATTTGTCC400.1076194575979337No Hit
AATCTCGGGGAGGAAGTGCTCGGGCGTCGCAGGGCCGGAGGCGCGG400.1076194575979337No Hit
GTCAGCGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC400.1076194575979337No Hit
GCTGCTGGGCATGTTACCTGACTTAATGAGGCTGGGAATCCCGAGC400.1076194575979337No Hit
CTACTTGGGCTGTGCACTGGCAGTTTAATGAACTGGACCAGCATCC400.1076194575979337No Hit
TCGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC400.1076194575979337No Hit
ACCTTGGGGGACCTCTGAGGAGCCGGTGACGGGTTGGCGTGCGAGT390.10492897115798536No Hit
GAATATGGGAACTGGTCAAGCCAAGACTTTGGGGAAGCAAGAAGGA390.10492897115798536No Hit
ATTCGCGGGGTTCGGTGTCTGGGGTATGAAGGTCCTGCAAACCCGA390.10492897115798536No Hit
CACTTCGGGGCGTCTTTGCGTTCGCCAGCGGGCGCGAAGCTGTCCG390.10492897115798536No Hit
TGCACAGGGGATCACGACCTAGGCCGCGTGCAGATTCCTACATAAA390.10492897115798536No Hit
TACGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10492897115798536No Hit
CGGAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10492897115798536No Hit
GTTCGGGGACCATTCAGGAACCTGGACCAGAGGTGGTAATAAAAGG390.10492897115798536No Hit
CTACTGGGGGCTATTCTTAATGGAGATACTGCATTTTAACTCAATT390.10492897115798536No Hit
GCTTACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA390.10492897115798536No Hit
AAAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10492897115798536No Hit
TCACTAGGGACTAATAGCTGGAGAAAAAGAGTCCTAAACCATTTGT390.10492897115798536No Hit
TCTGTTGGGGCAGGTGGAATGCCATCCATACCTGGCTCAGAATGAG380.10223848471803702No Hit
CAAACTAGGACAGTCAGGTGCTTCTGAGTTAAAAGGCCCAAGATTC380.10223848471803702No Hit
CGTAATGGGGTCGACTTCTAGTGTGGAGACGAATTGCCAGAATTAT380.10223848471803702No Hit
AACGCAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA380.10223848471803702No Hit
GTTAGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.10223848471803702No Hit
CAACTTGGGATAGCCATCTTATTGGCAAAGGAGCAGCCAAAGATGC380.10223848471803702No Hit
TTGCTCGGGGGCTGGAGTGAACTATTTTTTGGATGTGGAGATGGGC380.10223848471803702No Hit
ACACTGGGGGCACTCGGGTGGCGGCCAGAAACCGGCAGGACTGGAA380.10223848471803702No Hit
TATCTAGGGGACTACCATCAGCAATAGAAGGCCCTACACCAGTTTC380.10223848471803702No Hit
CCATCCGGGCACACTAACCTCGGTGGAAAAATAACCATTCCCTGCC380.10223848471803702No Hit
GCTGTTGGGAGGTCTAATCCCACCAGCGAGAAAACTACCACGTCTT380.10223848471803702No Hit
GCAATGGGGACCATGGCCAACCTCGAGCGTACCTTCATTGCCATCA380.10223848471803702No Hit
TTACAAGGGGGGTCAAGGTGGCTTTGTCTACTGAGAAGCCCCCTCA380.10223848471803702No Hit
TATTCTGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC380.10223848471803702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)