FastQCFastQC Report
Sat 31 Dec 2022
SRR5843578.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843578.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62445
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGCCGGGCGGGAGCAGTGGTGGCTGAATCTGCGGCTGATGCTGA1100.17615501641444473No Hit
GCTTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA780.12490992073024261No Hit
TTTCGAGGGAACCTTCTTCAGGGACAAATTCTGACTGTTGGGGAAC690.11049723756906078No Hit
TTGGATGGGCTACCCCTTAATTTTAACTCTGTGGTAACTGAGTGTC680.10889582832892945No Hit
ACAAGTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC680.10889582832892945No Hit
TTCTACGGGGTTGTGTCCAGTCGCTATCGGAGTAGCCGCGCTGGTG670.10729441908879814No Hit
CTTAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.10729441908879814No Hit
TGACAAGGGACTCATGGAGATATAACTATAGAGATAAAGAGCGACA660.10569300984866682No Hit
AAGCACGGGAACTGAAGGCCTTTTGGCTGCATGGCTACAGCTTTCA650.1040916006085355No Hit
GATTTTGGGCCAGCCCACTCCTGCATGGGCCTCTGTCCAGAAGGGG650.1040916006085355No Hit
GCTTATGGGTGGGCTGCTGCTGGGAAGGCATGGCAGAGCCCAGTTC650.1040916006085355No Hit
CTAATATGGGGGGGTTGCGGTAGAACATGGCGCAGGGACAACGCAA640.1024901913684042No Hit
TACTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.10088878212827289No Hit
AGTTACGGGGTAAACTGGCCATTCGTGAATCTATTGAGAGTGAGAT630.10088878212827289No Hit
TAACACGGGACCCTGAAATATCACGAATATATGAATGTAGGAATGA630.10088878212827289No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)