FastQCFastQC Report
Sat 31 Dec 2022
SRR5843577.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843577.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59252
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGCCGGGCGGGAGCAGTGGTGGCTGAATCTGCGGCTGATGCTGA1000.16877067440761495No Hit
ATTTTAGGGACACACTAATTGCCATGGCCACTCTGTGGCTTTGCCC720.12151488557348275No Hit
GTGCGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA720.12151488557348275No Hit
ACCAAAGGGACTAGCCAATGCTTCCCTGAATGTCTTACTCTTCTAT720.12151488557348275No Hit
GCATTTGGGATTCCTCCCTAGGGCAGGAGACCTGTCTCTTATATTC710.11982717882940659No Hit
GCTAGTTCTTTTTATGTTGACAATTTAACTCCTGATGTGTGGACAA700.11813947208533045No Hit
GCAAATGGGAGATTTCTTAATGAGATCAATCGCAGATGTAAGCGTG690.11645176534125429No Hit
GTGGCAGGGGGGATCTTCTGGATGCACTCTGGGAAACAAAGGCTGG680.11476405859717817No Hit
GCTTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.11307635185310201No Hit
CATAGCGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT660.11138864510902585No Hit
AACTTAGGGCTCCAGGACAAAATATCCTTTGGAGTATAATTATTCT630.1063255248767974No Hit
TTGTCTAGGGGGGGGATGTCGAGTGTGATGGGCAGCCATCTAGGCG620.10463781813272124No Hit
GCATTAGGGGCAGAATGGTCTGACCCTACTGATCTTCCCCCATCCT610.1029501113886451No Hit
CATAGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.1029501113886451No Hit
TGACAAGGGACTCATGGAGATATAACTATAGAGATAAAGAGCGACA600.10126240464456897No Hit
TTTCGAGGGAACCTTCTTCAGGGACAAATTCTGACTGTTGGGGAAC600.10126240464456897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)