FastQCFastQC Report
Sat 31 Dec 2022
SRR5843574.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843574.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23818
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGCAAATCCAAGTCGCTTTTTAAAAACTGTGACATGATGTGGAA460.19313124527668152No Hit
GCAACCATGATCAAGCACTTCCTGGAGGACAGCAGTGATGATGCTG400.16794021328407086No Hit
TGGCTTGGGGCTTCAGTTTAGGGGAAGTATGGGAACAAAGGACTTG390.1637417079519691No Hit
CAGTTAGGGTATGAAAACTTATTTGTGGAAAAGAATATGAAGTATA380.15954320261986735No Hit
GCTGCTGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT360.15114619195566378No Hit
CCAACAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT360.15114619195566378No Hit
TAGCTCGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC350.146947686623562No Hit
TGCATTGGGGGCAAAGAGGTCGGTGCGCAGCTCGCATCACGGGTGA350.146947686623562No Hit
GTGGCAGGGGAGACTAACATGGGGATCATTGCTGGAGTGGCATTTG350.146947686623562No Hit
ATTTCCGGGAGCGCAGGAGGCTCGGGTGACGTCAGGCGCGCCGCTG350.146947686623562No Hit
CTCATAGGGAACTTGCTTATGTTAAATGTGTGTAGATTTGGTGTTG340.14274918129146022No Hit
AGCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC340.14274918129146022No Hit
GCCACCGGGCGCCCCGCAGCGGGTGGACTCTATCCAGGTGCACAGC330.13855067595935847No Hit
ACGCTTGGGGTGGTGGATCAGGTGATCCGAGGGGCTTCGGAGGGTG330.13855067595935847No Hit
GTAATGGGAATGACCCACCAAACTCATGCATATCACATAGTTAATC330.13855067595935847No Hit
ATTAAGGGATGATCGGCTATGGCATGGCCAAGGGAGCCGTCCATCA320.1343521706272567No Hit
AATACTGGGGTACTGTGGCAGGGACCATATTTTCCTGTACAAATTA320.1343521706272567No Hit
TAGGAGGGGATGCGGAGGGCGCCTCTGCCCCTCTCATGGAGCTACT320.1343521706272567No Hit
AATGGGGGACGCAGGTGGCCCGCGCGACACGCGCATGCTCCCTAGG320.1343521706272567No Hit
TCCGTTAGGGGAGATTCAAGAGGGCGCTGAGCACCGGAGGAACTTT320.1343521706272567No Hit
GAGCTTGGGGCCGGAGCCGCGGCTGCCAGCGACATGTTCAAGGTAA320.1343521706272567No Hit
AATGCGGGGAGTGAGAGAGAAGCCTGCCAAGGGGGCCTGTCAGAAA320.1343521706272567No Hit
TTCCATGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT320.1343521706272567No Hit
CGTTCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC310.13015366529515493No Hit
TCTTAAGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT310.13015366529515493No Hit
TATCGAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC310.13015366529515493No Hit
CAATTAGGGGGACCTCTTCCTGCGTTCTCACGGCTCTTTCTGTTTG310.13015366529515493No Hit
CGCTGTGGGTGGAAGAATTTTCTAATTAGGACAGAGCAACAAAGCT310.13015366529515493No Hit
GCCATCCACCCGGCAGCCGCGAAGCAGCAACCATGCGTGAGTGCAT310.13015366529515493No Hit
CTACGTGGGGTGAGAGCAAAGAGCAAGTGGCCAACTCTGCCTTTGT310.13015366529515493No Hit
TCCATGGGGACTTGGAGGATTCTGGGTGGAAACTTCAGTCATCTGA310.13015366529515493No Hit
GATCTAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT300.12595515996305315No Hit
CTTCATGGGGGATAAATAACTAATGACTACTGAATCTCCTAATGGA300.12595515996305315No Hit
TCTGTCTACACGGTGGTCTGTCACCATCCATAGACACACTGGATCA300.12595515996305315No Hit
AACAGGGGCTTCTTCTTCTTCGGGAAAACACCAAATGGCGGATGAC300.12595515996305315No Hit
TTCTCAGGGGAGGCAGGAAAGATGGCTGTCCTTGCGCCTCTGATTG300.12595515996305315No Hit
TGCTTTGGGGTGAACTACCCTATGGAGAATGGCATCGTGCGGAATT300.12595515996305315No Hit
GTTAAGGGGGCAGAAGCAGATCTTATTTCCAGGAAAAGTTTTGAGC300.12595515996305315No Hit
TTCAAGGGGCTGATGCGGGGTGAAGAGGGCGAGTTCGAAGAGGAGG290.1217566546309514No Hit
GCTAGAGGGAGACAGACGCGGCGGACGCGGAGAGACGCTCGGAGCC290.1217566546309514No Hit
TAATGTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA290.1217566546309514No Hit
CTGCAGGGGACATCGACATCCGGGAGTCTGATTGCCTGTGGCTGTT290.1217566546309514No Hit
CATAGGGGGGTGCCCTACAAATGGGAGACAAAGACCTGCAGTGCCA290.1217566546309514No Hit
GTTAGCGGGGGAAGGGAAGGTGGAGTTTTCAAGCGGGAACTTGACC290.1217566546309514No Hit
AGCACAGGGCAGCAGGGATACAATGCTATTGGCTTCTCCCAGGGAG290.1217566546309514No Hit
TTCAGCGGGTGATACACGTTTCTGGAAACTGCCTCGTCATGCGACT290.1217566546309514No Hit
TGCCCCTTCCATGCCATGATAAACTCCTCTGTACATGTCGTCATGT290.1217566546309514No Hit
GCAATGGGGGAGAGCAGCCCCGGAGGACTTCCGGACTGCGCGTCCT290.1217566546309514No Hit
GCTAACGGGGAGGAAGCGGAAGTCCGGATTTTCAGCCGGCGCGTGA280.11755814929884961No Hit
GCTCGAGGGGCAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGC280.11755814929884961No Hit
TAGCAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA280.11755814929884961No Hit
ATATCAAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC280.11755814929884961No Hit
GATTTGGGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGC280.11755814929884961No Hit
CTGATAGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGA280.11755814929884961No Hit
CGAAACGGGCAATGATTTGGAAAGAAGGGATGGCTTAATCTCTGTC280.11755814929884961No Hit
TTAGCCGGGAGCGCTCAGCCCTGGAGCACAGCGTCCAGTGCGCTGT280.11755814929884961No Hit
GCAACAGGGGCTTCTGAAGTGATTTCCGCTCCTTTTTCTTGCGCGG280.11755814929884961No Hit
TTCTTGGGGCAGGAGCAGGAACAGGATGAACAGTCTACCCACCTCT280.11755814929884961No Hit
ATTGTGGGGGGGGGCGGGAGGCTAGGTACGGCGACAACAGGGGCGT270.11335964396674783No Hit
GTAGAGGGGCACTTACCTGGGTGACTGGTACAGCGTCAACTGGATG270.11335964396674783No Hit
CTTCAAGGGGAGTCTTGGCCAGCCAAAGGGGACTTGAAGGAGACGG270.11335964396674783No Hit
GGTTCTGAACCGTAACTTCCCAGACCTGGACAGGATCGTGTATGTT270.11335964396674783No Hit
CACAGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA270.11335964396674783No Hit
TCTTGTGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGAG270.11335964396674783No Hit
CAGTGAGGGTCCTGGACACATTCCAGAGAATTTCGTACCCAAACAT270.11335964396674783No Hit
GGCTACGGGTTCTTGGAGGAAGGGACATGCAGCCGGAGGACCTCAG270.11335964396674783No Hit
GCTTCGGGGGGATGACGGCCGCGCCATGGCGGTGCGCATCCAAGCC270.11335964396674783No Hit
TTGCGCTGGGGCATGAAGCCGGTGATATGATGGGTGGCCACGCCAT270.11335964396674783No Hit
CCTTATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC270.11335964396674783No Hit
TCACTTGGGGCCATCCTGGAGAATGAGGACTGGATCGAAGATGCCT270.11335964396674783No Hit
TGTCAAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA270.11335964396674783No Hit
ATTACCGGGCAGTGGCAATGGACTATTTAAGCCCTAACTCAGCCAA270.11335964396674783No Hit
GCGTTGGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC260.10916113863464606No Hit
GACTCAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG260.10916113863464606No Hit
TCTAAAGGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAA260.10916113863464606No Hit
GTTCAGGGGGAACGGAAAGGTTCTCAGGTAGAGAGCAGAAATGTCC260.10916113863464606No Hit
CAATCGGGGATGTGGTGATGCTTCTCCATGGCCATTTCCAGCCACT260.10916113863464606No Hit
GCTCCAGGGTCCTTTCAGCGGCGCGCGGCTGCAAGATGGCGGTGCA260.10916113863464606No Hit
AATTACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC260.10916113863464606No Hit
CCGCTGGGGCAGAAGAATACGCCCAGCAGGAGGTGGTGAAGAGATC260.10916113863464606No Hit
GTCCAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC260.10916113863464606No Hit
TCTATGGGGAGTGAGAGAGAAGCCTGCCAAGGGGGCCTGTCAGAAA260.10916113863464606No Hit
CAGCCTGTAGGCAGCGTCTTTGTCCCACAGCTGGCCCAGGGTGGAG260.10916113863464606No Hit
GCTGTGGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTT260.10916113863464606No Hit
CTATAAGGGGCCGACAAGGCGGGTTGCGGGGGTTGGCGCCAGGGCT260.10916113863464606No Hit
GAATTAGGGGACACACTGCAGGACCGCTAGACGGACGACAACTTCT260.10916113863464606No Hit
ACGCCATACACTACTTCTTCTCCAAACTGCAGATCACGGGGACAGC260.10916113863464606No Hit
AGCAACGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA260.10916113863464606No Hit
AGTTCTGGGCACACTTAGAGTAAGGAAAAGGCAGGATAATCAGGCA260.10916113863464606No Hit
AACTTGGGGGCTCGCGCGGAAGCCGGCTTCTAGGTGGGAGCTCCGT250.10496263330254428No Hit
GCTGTGGGGGGGCCCAGCCATGTCCGCAGCCATGAGGGAGAGGTTC250.10496263330254428No Hit
GAGCTGGGGGGAGGTAGCTGCCGAAGTCTTAGCAGAGGTGATCACA250.10496263330254428No Hit
AAAATGGGGGAGCTCCGGTCCATCAGCTGAGCAGATTTTTAAGAAT250.10496263330254428No Hit
TCCTAAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT250.10496263330254428No Hit
TCATGTGGGGCCCATGCAGGAGCATCAGTAGACCTAACAATTTTCT250.10496263330254428No Hit
CGACCAGGGCAGAATCGCTGACTTCACGCCCCTGCTTCATAAAACC250.10496263330254428No Hit
TACTTCGGGGGTGCTCCTGAGCTGCCAAGGCTGCGGAAAGTGAGAG250.10496263330254428No Hit
ATTGCAGGGACAGCAGCCCAAGCGACTCCGCAGTGAGGGTGCTGCT250.10496263330254428No Hit
CTCAATCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC250.10496263330254428No Hit
CACGATGGGGGGGTGAAGGCGGTTGTGGTCAGTGTAGGCTCCCACT250.10496263330254428No Hit
CTCGCAGGGGAGAAGAAGGAGGCGACAACGCCGGAGCAGGGTCCCC250.10496263330254428No Hit
GCTATAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT250.10496263330254428No Hit
TACTGCGGGGGCCCAGTCACCGGAGCCAGCCCTGCTTGCAGTTTCC250.10496263330254428No Hit
CATTCTGGGTCACAGTAGGATTAGATGTAGACACACGAGCTTACTT250.10496263330254428No Hit
GCTGACCACCGGTTTGCCTGCCATGTCTTTGTGTCTGAAGATTCCA250.10496263330254428No Hit
AGCCGAGGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGTA250.10496263330254428No Hit
ACCATTGGGGACATTAACCATAGGGACTGTTGTCTGCTCCCGTGGG250.10496263330254428No Hit
CAAACCGGGATTGGCGCTAGTAGATCACAGAACAACCGCCGCATAC250.10496263330254428No Hit
TGCTTGGGGAGGGTGATCCGAGGGGCTTCGGAGGGTGTTTGAGCAG250.10496263330254428No Hit
ACTCAGGGGGCTCCCAAGCGCGGCGGCGGCAGCGTAGTTCCTAGCC250.10496263330254428No Hit
TCGCTTGGGGACCCTGAAAGTGGAGAACAAGAACAGAGCCCTGGAA250.10496263330254428No Hit
TTTTACGGGGTAGGTGACATTGGCTGTCAGAGCACCATGTCCTGTA250.10496263330254428No Hit
AATGCTGGGACGCGCGCACGCTCTTGAACAAACGCTGGAGCTGAGG250.10496263330254428No Hit
CTTGCCGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC250.10496263330254428No Hit
CGCTTTGGGGTTGTCTTCACATGTTTTTACAGGATGAAATTATAGA250.10496263330254428No Hit
GTACCTGGGGGGAGGATGGGGCTGTTACATAAATACAGATTTTATT250.10496263330254428No Hit
AACAAAGGGACTATAACCCAGATCTCATGGGAGAAGATACATGGCA240.10076412797044253No Hit
GTCTTAGGGACTTAAGCCAGCACTGCTGTGCGGGGCTCTGGCTGCG240.10076412797044253No Hit
CGGCCCGGGGCTGAGGAAAAGTCACTACCGGAAAAGCAAGAAAGAG240.10076412797044253No Hit
AAGCAAGGGAGCTCCAGAAATGGCTACCGCGATGACAGTTTCCAGT240.10076412797044253No Hit
CACATAGGGGTAGGATTTCAAATTCATTTTCCATGTAATTTCTGCA240.10076412797044253No Hit
CTCTAGGGGGGCTCTACGCTTCTTTTACTCTTTTGTAAAGGTGCTC240.10076412797044253No Hit
CGCCAAGGGTGGGAATTCAGATGTATATATGATGTCCTTGGACGGG240.10076412797044253No Hit
TGCCACGGGAGAAACCAGAAGTTCCGCCGCCGAGCGAACACCTTAG240.10076412797044253No Hit
TCGAAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCTT240.10076412797044253No Hit
GTATTAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA240.10076412797044253No Hit
GTCGGCGGGCAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCAGGTC240.10076412797044253No Hit
GACCAAGGGGTTTTAGAGAGTGGCAGTGAGTTGGGTCTTGGCTCCT240.10076412797044253No Hit
TTGCGCGGGACACTGCAGGACCGCTAGACGGACGACAACTTCTGCT240.10076412797044253No Hit
GCCTACGGCACGGTGGGGACGGCTGGAAGGTGGAGGAACTGCCCGG240.10076412797044253No Hit
GTCAGAGGGGGGAAGGTAGAAGAGCTGAAGGCACTCGTGGAAGAGC240.10076412797044253No Hit
ACATTGGGGTCTCACACCGGGATGCCACAACTAGATACATCAACAT240.10076412797044253No Hit
GCATAGGGGAGTCAAAATGGCGCTTGCTCAGAAGCTGCCGAGGCGC240.10076412797044253No Hit
TATAAAGGGGGGCAAGAGCAAACGAGCGGCTCCTTGCAGGCTGTGT240.10076412797044253No Hit
TACAAGGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA240.10076412797044253No Hit
TGCAAGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA240.10076412797044253No Hit
CGTTCCGGGGAATCAACAGGCCATCCAGACTGTGCGGGCCCGGCAG240.10076412797044253No Hit
CAGCTTGGGGACTCACTTGGAGGATTCTGGGTGGAAACTTCAGTCA240.10076412797044253No Hit
GATTTAGGGGGCAGAGTCTGGGTGGTGGATCAGGTGATCCGAGGGG240.10076412797044253No Hit
GCTAAAGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATT240.10076412797044253No Hit
GTTATAGGGGAGTGGCCTTGTTCTCGATACTTCGTTGTGGTTGTGA240.10076412797044253No Hit
CGAACTGGGAGCACCCAAGGCTGGAGTGTGGGGCCTGCCAGGAGTC240.10076412797044253No Hit
CTCTATTGGGTATATGATTGAGCCCATTGATGAGTATTGTGTGCAA240.10076412797044253No Hit
GCGCTGGGGGCGCCAGCCCTGGCTGACCACAGCTTCCCTGCCCACC240.10076412797044253No Hit
ATTCTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT240.10076412797044253No Hit
CGGACTGGGGGGGCACTGACTGTGTGCTGACATCAGGTGAAATTGC240.10076412797044253No Hit
TCACCAAGGGGATGCTGTGGGCTTTGGCGATCAGATCAATAAGGAT240.10076412797044253No Hit
TACTAAGGGAGTCCGGGTGTGCTGTCTCACTGGTGAGGTCGTGTAC240.10076412797044253No Hit
AGAATAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC240.10076412797044253No Hit
TCTGCAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT240.10076412797044253No Hit
GAAAATGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTTT240.10076412797044253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)