FastQCFastQC Report
Sat 31 Dec 2022
SRR5843570.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843570.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34950
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG1000.28612303290414876No Hit
CCACAAGGGTGCGCTTGAATATGACTCTTCCTGATGCCCTAGTGCC530.15164520743919885No Hit
ATCTTTGGGGGGGATCATTGCTGGAGTGGCATTTGGAATTGCGTTC510.1459227467811159No Hit
TTCAAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT470.13447782546494993No Hit
GATATTGGGGGGGACAATGGGATTACCTATGTGTCGGCTTGTCTTG460.13161659513590843No Hit
GCACACGGGGGGAGAGAGGCTTGCTGGCCGGGGCAGACACTGCATG440.12589413447782546No Hit
CAACACGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA430.12303290414878397No Hit
ATTCTAGGGCGATCTCATTCTGGGGCAGTGGTAGAGGCTCAGACAT430.12303290414878397No Hit
GTCAACGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG420.12017167381974249No Hit
GGCAACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC420.12017167381974249No Hit
ACGCATGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT410.11731044349070101No Hit
TACGCGTGGGGATTTAAGACTTGAGCTGAACACAGACTCTTCCCTT410.11731044349070101No Hit
TTCACAGGGGGAGGGGGCTGTTTGTAAGCCTAAGGAAGTGTGTACC410.11731044349070101No Hit
TAACGCGGGTATTGTGAGTAATATAGATTGGCGCTAGTAGATCACA400.11444921316165953No Hit
GGATCAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT400.11444921316165953No Hit
CACAAAGGGAGAGCCGGTTTGCAGGCAACGCTGTGGGGATCGGGCT400.11444921316165953No Hit
TTCATAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG390.11158798283261802No Hit
CACTATGGTTACCTGAGAAATGTTACGACCAGCTCTTCGTGCAATG390.11158798283261802No Hit
CTTGTAGGGGCGCGGGAAGGGACGGACCCAGCTCTCTCTTCTTCCT390.11158798283261802No Hit
ACACCTGGCCTGGGCTGCCCACTGGGAGTGGGGATTCCAAACGGTT380.10872675250357654No Hit
GCAAATGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG380.10872675250357654No Hit
CTGCCCGGGGCTCATCTTCGCGCTTGGCACAGCCGGCAATGCGCTG380.10872675250357654No Hit
CACTAAGGGGGGAATTCCAATGATAGCCTAGTCTCGCGCAGTACAT380.10872675250357654No Hit
TATTAAGGGGGCCACATCCCAGCCGGGTTCTCAGGAAACCCGGGGG380.10872675250357654No Hit
TTGCCCGGACCTCCCCTCAGCAGAAGCTTATCATTGTGGAAGGGTG380.10872675250357654No Hit
TTATGGGGGGGTTCCAATCCCTCCTTTTAGGCATAAGCAAGTTGCC370.10586552217453506No Hit
ATAGGTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG370.10586552217453506No Hit
CTAGCAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA370.10586552217453506No Hit
GGCACTATGGGCCTCCGAGCTTCCACAACATGTTCCAGCCTTTCTT370.10586552217453506No Hit
TCGGGGGAGAAGCTGCTGGCGGAGGACAAGGAGAACTAACTCTAAT370.10586552217453506No Hit
CGCATAGGGCGACTTCTCTCAGGCTGCACACTGTTCATGGAGACCG370.10586552217453506No Hit
GTTAAAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT370.10586552217453506No Hit
GTTTAAGGGAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGAGCT370.10586552217453506No Hit
CCACATGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT370.10586552217453506No Hit
CATACCGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG360.10300429184549358No Hit
ACATAGGGGGCGGAGATAAAGGGCGAGCTGCAGGCCAGGCGGCCCC360.10300429184549358No Hit
ACTTGAGGGGGCCGCTGCGTCCGGCGTTCCCGCTGTACCCGGCTCC360.10300429184549358No Hit
TGTACTAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG360.10300429184549358No Hit
TCGAGCGGGTCCATGATGCTGGCCGTGCCCGAACTCCTGCTATGGC360.10300429184549358No Hit
TTGCCAGGGGAATTACCTTATTCCTTTGTATTTTCCTTTCTCTTGT360.10300429184549358No Hit
CTTGTGAAGGGGGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGC360.10300429184549358No Hit
TCTAGCGGGGACCTGGGGCCAGATGTATCTAGTGGATAGACTTGCA350.10014306151645207No Hit
AACGCGGGGGAGAGTGTGATTCCCAAGACTGACTGCAGGCTACGGC350.10014306151645207No Hit
GTATTCGGGACACCTAATCGGAGGAGCTACTCTAGTATTAATAAAT350.10014306151645207No Hit
GCACACGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA350.10014306151645207No Hit
CCTACAGGGATGAGTAAGGGGGCGGGGGCAGGAAAGCCTAAGATGG350.10014306151645207No Hit
CGCACTGGGGAAAAGCATTCTATTCTCATGCAGAATTCACCTTTTC350.10014306151645207No Hit
GGCTATGGGCGTCAAGGTGCTGACTGAGAAGGAGCTGGGACACCCA350.10014306151645207No Hit
TCTAACGGGAGGCAGGGCCCATGGGGGCTATCGGGCCTGCGGGGGA350.10014306151645207No Hit
TGAAATGGGGGCAGAGCTCGGCAAGGCGCTGGGACGGTGGGGCTCT350.10014306151645207No Hit
AGACTTGGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGG350.10014306151645207No Hit
TATTGAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT350.10014306151645207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)