FastQCFastQC Report
Sat 31 Dec 2022
SRR5843569.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843569.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33165
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG860.25930951304085637No Hit
CACTAAGGGGGGAATTCCAATGATAGCCTAGTCTCGCGCAGTACAT490.14774611789537162No Hit
ACGCATGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT470.1417156641037238No Hit
AAAACCGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG460.1387004372078999No Hit
GCAAATGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG440.13266998341625208No Hit
CAAACAGGGGAGAGGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGG440.13266998341625208No Hit
TTCACAGGGGGAGGCCAGGCTTGCGGCGGGGCGCAACGGTGTCTCC430.12965475652042818No Hit
TCGCAGGGGGGCTACTGGAACTCCGCGCTGGGCTAGGGAACCGGCT410.12362430272878035No Hit
ATCTGTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT410.12362430272878035No Hit
CCACCAGGCCCTCTTCCCGGGTCCCCACTCCTTCCTCTCCTTTTGG410.12362430272878035No Hit
ATCTTTGGGGGGGATCATTGCTGGAGTGGCATTTGGAATTGCGTTC410.12362430272878035No Hit
TGAAATGGGGGCAGAGCTCGGCAAGGCGCTGGGACGGTGGGGCTCT410.12362430272878035No Hit
CATAGTGGGAGAATCTAGTCCTACGCCACGGTTTTGACCACGCGTG400.12060907583295642No Hit
TCTAATGGGGTGCTAGTGGAGACACAGTTGTGGTGAGACTCTAATC400.12060907583295642No Hit
TAACGCGGGTATTGTGAGTAATATAGATTGGCGCTAGTAGATCACA390.11759384893713253No Hit
CTAGCAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA390.11759384893713253No Hit
TTCAAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT390.11759384893713253No Hit
GCATGCGGGGAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGAGC390.11759384893713253No Hit
CTTGTGAAGGGGGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGC390.11759384893713253No Hit
TGTACTAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG380.1145786220413086No Hit
TACCATGGGGGGAAGAGACCAAAATCAACAGCTCCAGCCCTCTGCG370.1115633951454847No Hit
TCTAGCGGGGACCTGGGGCCAGATGTATCTAGTGGATAGACTTGCA370.1115633951454847No Hit
GCTGCCGGGAAGTCAGACCTCGATGCTGGTCTCATTAGCGCTTGGC370.1115633951454847No Hit
CCATTGTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC370.1115633951454847No Hit
CGCGCAGGGGCTTTCGGAGCTGTGCGGCATTCTGAGCAGGAATGGC370.1115633951454847No Hit
CATAGAGGGGGTTCAGTCGGATCCCGGCAGCAGCTGCGGCGGCTCA370.1115633951454847No Hit
GTTACCGGGAAAGATCAGTGCTCTTTAAATATTTAAGCCGTGATAT370.1115633951454847No Hit
AAATCGGGGTTGCTACAACTTCAGGAAAAGCTCCTCCCAACCTTCC370.1115633951454847No Hit
TCGCTAGGGGATTTCTGTCGGCTGAGGTGACTAAGATGGAAGCGTT370.1115633951454847No Hit
TTGCCCGGACCTCCCCTCAGCAGAAGCTTATCATTGTGGAAGGGTG370.1115633951454847No Hit
CATGATGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG360.10854816824966079No Hit
TTTCTTGGGGGGATAGCTAGAGCGTCCACACGTGGAATTCTTTCTT360.10854816824966079No Hit
TTTGCGGGGACCCTCGGTCCGGGACAAGTTTATCTTGTGACTGCTC360.10854816824966079No Hit
TTCTCAGGGGGCGGACGCCATGGTGCGGTTCAAGCACAGGTACCTT360.10854816824966079No Hit
GGCTAAGGGGAGCGCAGGAGGCTCGGGTGACGTCAGGCGCGCCGCT360.10854816824966079No Hit
GCCAAGGGGGGCCACTTCCTGGAGACCACAGGTGTAAGAGCCAGCG360.10854816824966079No Hit
GCTTGTGGGGTGTCAAGATGAAGCTGAACATCTCCTTCCCCGCCAC360.10854816824966079No Hit
TACTCTGGGGGTCATCTGTGTTTACACGGACGACTTCACGGACCGC360.10854816824966079No Hit
CACAAAGGGAGAGCCGGTTTGCAGGCAACGCTGTGGGGATCGGGCT360.10854816824966079No Hit
CTGCCCGGGGCTCATCTTCGCGCTTGGCACAGCCGGCAATGCGCTG360.10854816824966079No Hit
AATACCGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCTGTCAT360.10854816824966079No Hit
CACACAGGGGGAGGAGTAACAGTGTCTTACTTTGAGTGGCTAAAGA360.10854816824966079No Hit
GGTACCGGCAGCCGAGATCGGAAGGACTGTGTTGGGTCACGTCCTG360.10854816824966079No Hit
AACCACGGGTAGTCCAAATCATTACAGGTCTTTTCTTAGCCATACA350.10553294135383687No Hit
GACGCCGGGACAAGGCTACCATCGGAGTGGATTTTGAGATGGAACG350.10553294135383687No Hit
ATAATGGGGGGAAGTGGGCGCAAGTGCTTGGCCCTGGCGGAGGCCG350.10553294135383687No Hit
CCAGAATGGGGCCACCCAGTGACCCATTGATCCTTGGGTAATGGTC350.10553294135383687No Hit
CTTGTAGGGGCGCGGGAAGGGACGGACCCAGCTCTCTCTTCTTCCT350.10553294135383687No Hit
AGCGAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT340.10251771445801297No Hit
GGCTGCTGTATACAAGGCCCTGAGTGACCATCATGTATACCTCGAA340.10251771445801297No Hit
CAAACCGGGGTGCTGGAGGACTTCCCCACGATCTCCCTGGAGTTTA340.10251771445801297No Hit
TCGGGGGAGAAGCTGCTGGCGGAGGACAAGGAGAACTAACTCTAAT340.10251771445801297No Hit
AATTCTGGGAATTCCTGGAGGAATAGGTACCAAGAAAAAAACGAAC340.10251771445801297No Hit
ACTGTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT340.10251771445801297No Hit
CCACAAGGGTGCGCTTGAATATGACTCTTCCTGATGCCCTAGTGCC340.10251771445801297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)