FastQCFastQC Report
Sat 31 Dec 2022
SRR5843568.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843568.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38325
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACATAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA500.1304631441617743No Hit
TTTTAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA450.11741682974559686No Hit
ACGTTTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA440.11480756686236139No Hit
ATTAGGCGGGGTTTTGATGAAGGCAAATTAAAGGCTGGCCAGAGTG420.1095890410958904No Hit
TACTCCGGGAACCAGGTCAAGGGCAAGCCTGACCTGAACACCGCGC420.1095890410958904No Hit
TGTACCGGGGATAACATTTATACAACATGTCCAGAAGAGAAAAATC410.10697977821265492No Hit
CAGTTTGGGGACACAAGAGCAAGCTGATTGCAGGGAAGATCATCCC410.10697977821265492No Hit
TTATACGGGGGAAGATGAGCTCCTTTGAAATGCTTCATTAAATACT410.10697977821265492No Hit
TCTACCGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA410.10697977821265492No Hit
GTAATTGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT410.10697977821265492No Hit
TTCGCCCTTAGAAAGAGAGCTCTGACGCCAGTGGCAATGGACTATT400.10437051532941945No Hit
ATCGCTGGGGTTCCGGTGTCCGGAGGCACTCTTCCAGCCTTCCTTC400.10437051532941945No Hit
TCTCAAGGGGCCCGGAAGTGGGTGAAGGCGGTTGTGGTCAGTGTAG400.10437051532941945No Hit
CGTAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC400.10437051532941945No Hit
TCTTCAGGGGGCGCGCGCCCGGGGCCGCTTCAGTCTGCAGCCGCGA390.10176125244618396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)