FastQCFastQC Report
Sat 31 Dec 2022
SRR5843567.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843567.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36659
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAAGGGGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGG500.1363921547232603No Hit
TACTCCGGGAACCAGGTCAAGGGCAAGCCTGACCTGAACACCGCGC470.1282086254398647No Hit
TATTTAGGGCGTGGACAAGACCAAGTCAGCAATGACCAGCGGTGTC460.1254807823453995No Hit
ACAAATGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT450.12275293925093429No Hit
ACTAAGGGGATAACTGAGGCGGAAGCATAGCTTGTGGAGCTGGGCC440.12002509615646909No Hit
GTAATTGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT440.12002509615646909No Hit
GATAAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT410.11184156687307346No Hit
ATCTCAGGGCAAGGAAATGTAGAATCAGTTTGTAGATAGATAAAAT400.10911372377860826No Hit
TCTCTAGGGGGGAATTGTTGAATTCTTGTGAATGAACAGTCTTCAT390.10638588068414305No Hit
TCTGCAGGGGTTGGTTGGTTCAGTAAATAAGAACAATGAATTGTTC390.10638588068414305No Hit
CAATGTGGGGAAGAACAGCTGTTGGAGCAACAAGAACACTTAGAAA380.10365803758967784No Hit
TTAGCAGAGCAATATAGCATTTGCCCAAATCTGCCTCCTGCAGCTG380.10365803758967784No Hit
CTTTGAGGGAATGCATCTTGGACCTGCAATCTTTAGATTTTTACAA380.10365803758967784No Hit
GCACTTGGGATCACTTTGAATCTGAAGATCAACATGATTTTCAGCA370.10093019449521264No Hit
GATGCCCAGTCCTCGGATGAGTGCTGAAGACAGGGCTGGGAGACCC370.10093019449521264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)