FastQCFastQC Report
Sat 31 Dec 2022
SRR5843560.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843560.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32064
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCCAGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA560.17465069860279442No Hit
TTATATGGGAATCTCCCAAGGTAACCTTTGTCACCAAGAGTGGGCC540.16841317365269462No Hit
TCGCATGGGGGATGAGAATGGCCTGTGGCTTATCTACCCAGCTCTG540.16841317365269462No Hit
CCGTGCGGGACATCCTCAACACTCACTCAGAGAGGGGCATTGAAGA530.1652944111776447No Hit
TTATGGGATGACACAGCAGCAGGAGAACCCCAAGTTCCTATCCCAT480.14970059880239522No Hit
TGGCTCGGGATGGAGAAGTAATTCAGCTACAGGGTGACCAGCGCAA480.14970059880239522No Hit
GTATTAGGGACAACAAGGGGTTCAAGGGTGAGAAGGACCATTGGCG470.1465818363273453No Hit
ACATATGGGGGGAATTCACTGTCCTTTCATCCATAAGCGGAGAAAG470.1465818363273453No Hit
ATCTTGGGGAACATCCGGAGAGGAATCGAGAATTACTACGATGATC460.1434630738522954No Hit
CCAACCGGGCCGACAGACTGCGGGGCGGACGGTGGACGCGGTTTAG460.1434630738522954No Hit
GCAGATGAGACCTGATAACTCAAAGCCTCCTGTGTATGGTGCCTGC460.1434630738522954No Hit
ACTGCTGGGACCATGATAACTGAGCAACTGAAGAAGACCTACTTCA450.1403443113772455No Hit
TCATTAGGGACCAGCAAGGAACACGAACTTCCCGGGTACACACGGC450.1403443113772455No Hit
ACACGACGGATGTCCATGAAGGAGGTAGACGAGCAGATGTTAAGTG450.1403443113772455No Hit
TTCATCGGGAGGCAGGCTTTGGTTGAAGAAGCCGCCCCACCTGCTA440.13722554890219563No Hit
TGCACTGGGGTGGTTCTCATCGTCATCCTTGTACTGTTGGTTATTG440.13722554890219563No Hit
AGCGTAGGGCAGTATGTTACAGAGAAGGTCCTGGCTGCTGTATACA440.13722554890219563No Hit
TTAAGCGGGGACCAGAGTGGTTCCTATGCCTCCACCCACTCATCAG440.13722554890219563No Hit
GAGCAGGGGGGATGGAGGACATGCCTACATTGCAGGCCAGTGTGGT430.1341067864271457No Hit
GACGCTGGGATCACATGAGGTTTAGCCTGCTAAAGAATGAAACTTA430.1341067864271457No Hit
ATACCGGGACCCCACAAGCCTACCATCACGCCCCCTTCAGAGCTCA430.1341067864271457No Hit
CAGTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT430.1341067864271457No Hit
TGACACGGGAGAGGAAATGTGGGTAAACCTTCCCACTTACCCGGGA430.1341067864271457No Hit
TAGCATGGGGCTTCCGGCTGTAACCGCTGGAGGCTTCTGCTGACGG420.1309880239520958No Hit
GATACAGGGATTTCTGTGAAGGGACTGCAGTGCATATGTGCATGCA420.1309880239520958No Hit
TACGCGGGATCTGGCAACGGGGAAATGCTTAATTTATAAGCGGGCT420.1309880239520958No Hit
ACTTGAGGGACAGGTCAAGACCCCAGAGGGAAAGTTCCAGAAGACC420.1309880239520958No Hit
CTCGAAGGGATGATAATGAAGTACGGAACTGGGAACTGGGGTCGTT420.1309880239520958No Hit
TGCATTGGGGTCGGGGGCGCTGTCTACTCACTCCTAAATATCAAGT420.1309880239520958No Hit
GCCATAGGGGAGCGGGGGGGGGTACCATCCTCATAGCCCCAGAGAG420.1309880239520958No Hit
CTTACAGGGACTTTTATAGACTTTAATACATAAGTAATTTAAATTA420.1309880239520958No Hit
CTGTTTGGGAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCT420.1309880239520958No Hit
AGACAAGGGGGCCTGCAGGCTGCTGGATGCTCTGGAGTATCTCCAT410.12786926147704591No Hit
TACAATGGGAAACGCAGCATCTCCTGCCGTTCTCTCAGGGACTCTC410.12786926147704591No Hit
CCACGTGGGGCAGACCGGCAAGTCAGGGTGAGCCCCTGCCACTCAA410.12786926147704591No Hit
GAGTGTGGGAGAATCATGAATGTCATTGGAGAACCTATTGATGAGA410.12786926147704591No Hit
CCTCAGCATTTTCTTTCTTTAAAAAATTGGGTGGGATTAATATTAT410.12786926147704591No Hit
ACTCACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC410.12786926147704591No Hit
TGTTTTGGGGATCTCCAATTAGGGACAGAAAACACAGCATAATTCA400.124750499001996No Hit
CAACACGGGATGTCCACACCTGGTGCATCATGGAGGCTAGGAAAGG400.124750499001996No Hit
TTGCATGGGAGATCAGGAATTCAAGGGTATCCTCAGGCTCCATAAT400.124750499001996No Hit
TCTTAAGGGACCCAGGATGAGGTTGCTGCTTCTGCCATCCTGACTG400.124750499001996No Hit
GTAACTGGGGGTTTCCAAGGAGCTGAGAATAGAAAGGAACTAGCTT400.124750499001996No Hit
TGTGTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC400.124750499001996No Hit
AAGTCAGGGAGATTCAATTGCCAAGGCTCGTGGTGGTAATATTGGA400.124750499001996No Hit
TTGTTAGGGGCTCCATCCAATAGCACAAAAGCTTATAAAGTCACCT400.124750499001996No Hit
GAAGACGGGGGAGCCGAAGAAACAGGATGCTGAGAGTCTTCAGCGG400.124750499001996No Hit
CAAATAGGGAACCTGCCGGCTGATCGTTTTTAGGATATTGTGAGTA400.124750499001996No Hit
ATCCACGGGAACTGGAAAGCTGATAGAAGATGAACGCAGTGACAGA400.124750499001996No Hit
TTTTGTGGGGCATCTTAGTTCATATTCAGAAGCCTTTGATGGGGCT400.124750499001996No Hit
ATCGTGGGGGATTCGAGAGGTGGCTGGCCAAGTTGGGGTGCCCCTG400.124750499001996No Hit
CTGCATGGGATAGACAAAGCGGGGCGGAGGGGGGGGGCATCATCTG400.124750499001996No Hit
CGCTCAAGTATGGGAAGCGGCTGCTGGTCGTGCACTATGAGGAGCT390.12163173652694612No Hit
CTCTACGGGAACCCAACCAATACCAAATAACGTTTCAACTCCATCT390.12163173652694612No Hit
TCGCCTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT390.12163173652694612No Hit
CAAGCAGGGATTGTTTGTTAAATCTCAAAATAAGGTGTTCTGAAGT390.12163173652694612No Hit
TTATTCGGGGGCTTCTGAAGTGATTTCCGCTCCTTTTTCCTGCGCG390.12163173652694612No Hit
GATCAAGGGCTCCATGGGTGTTCCAAGAGCCTTAAGTATTTTTTTT390.12163173652694612No Hit
CATATCGGGGACAGAGGCGGAGCTAGCTCTGATTGCCACACCCCCG390.12163173652694612No Hit
AGTTGAGGGGTACGTTTAGTGTTTCGGAAGAGAGAAATCATCAAAG380.11851297405189622No Hit
AGCTTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT380.11851297405189622No Hit
CGTATCGGGGAAGAAAGGCTTTGACTTTACACTCATGGTGGCAGGA380.11851297405189622No Hit
CCAAAAGGGATGAAAGCCATATGACAGTAGCTTGTGTCATGGGGAA380.11851297405189622No Hit
TAGCGCGGGGCCCATGCAGGAGCATCAGTAGACCTAACAATTTTCT380.11851297405189622No Hit
CGACTTGGGAGAAACTGACAGTGAGCACCAACTGAAGGCTTTTACA380.11851297405189622No Hit
CTGTTAGGGATAATGTCAGTATTCAGGAGACTGAGTGAGGTAAGAG380.11851297405189622No Hit
AAACAAGGGGGGGGAAGAGAGTATGGATTTGTAGATTGAGAAATTG380.11851297405189622No Hit
TGCTCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA380.11851297405189622No Hit
AAAACAGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGG380.11851297405189622No Hit
GCACACGGGATCTCAGCGGGGGAAAGAAAGATGTGTTTATCAATGA370.1153942115768463No Hit
ACGTTGGGGTTCTTACACAAGGGTTTTGTGTTAGAAATTCTGCTGA370.1153942115768463No Hit
AAAGCAGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC370.1153942115768463No Hit
TCGCACGGGGATTTGGGGATGCAGTCAACAACACAGAGTGCTGGAA370.1153942115768463No Hit
CTTACTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA370.1153942115768463No Hit
AGCTTTGGGACCAGAATGAATGAAGAGCAGATAGCTACTGTCTGCC370.1153942115768463No Hit
TGCACTGGGCAGACTACAACATCCAGAAAGAGTCCACCCTGCACCT370.1153942115768463No Hit
AGCTGCGGGGTTGGTCACGTGTGGAAGGTGGGCTGAGGTGCTTCAT370.1153942115768463No Hit
CATCTCGGGGTACAAGAACATGAAAAGCCTTCCTTCTATTTCTTCC370.1153942115768463No Hit
AGTAACGGGATGCCTCCAATGCCCGGAAACATCTTAGGACCCCGGG370.1153942115768463No Hit
AATAAAGGGGAGTGGGAAATCATCAACAATACCTTCAAGGGCATGT370.1153942115768463No Hit
GCCCCAGGTTACAAGGTCTTGGCACAATTACATGTGCAACTGCGTC370.1153942115768463No Hit
CTCATCGGGGTTTCTTGAATCCAAAATGCCACATTTCCTCCTGGGA370.1153942115768463No Hit
CATCACGGGGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATT370.1153942115768463No Hit
CGGCGGGAGGGAGCACAGTGCCTGTATAGACAAAGCGGGGCGGAGG370.1153942115768463No Hit
TATCCGGGGACTTTTGTTTTCCTTTTTAAACTGGCAGCTTCTTTAT370.1153942115768463No Hit
GCGCTGGGGTTTGCCAAAGGAAGAAAACGCAACTATAGCAACTTAT360.1122754491017964No Hit
CTGGGTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA360.1122754491017964No Hit
TTCTAAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT360.1122754491017964No Hit
TACTCAGGGAACTGCCCAGAGTGCAACGCTCCGGCTCAGACCAACA360.1122754491017964No Hit
TTGCAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG360.1122754491017964No Hit
AATTTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC360.1122754491017964No Hit
CGCTTGGGGCAGTATGTGCTGAGCACGAGTTCCACAGTGTCCTGGT360.1122754491017964No Hit
ATCTATGGGGATGCTGAAATTACCATAGTGACTATTAATTTTCAGC360.1122754491017964No Hit
TCAAGGGAGCCGCTGTGCTGTGTGTCCTTCATTCAGTGTCAGGTGG360.1122754491017964No Hit
ACTACCGGGTGGCTTTCTAGGCTTTATTGTATGAGCCCACCACATA360.1122754491017964No Hit
TATTTGGGGACGGTCCCATGAAATTATTGGGAATTCCCCCAAGTAG360.1122754491017964No Hit
CGCCACGGGAGTGCAGCGGCAGCAGCAGGGGAAGATGGCGGCGGCT360.1122754491017964No Hit
TTAGCAAGGGGTAGCATGGGTGGTTCATCAGAGCAGTGGTGGCTCT360.1122754491017964No Hit
CTCCATGGGAACGGTGCTGGCAAAACAACTCCATATGGTTTGGTGT350.1091566866267465No Hit
GACACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC350.1091566866267465No Hit
GCGCATGGGGTTATTGCTACTGGGGGCTACGGGCGAACCTACTTCA350.1091566866267465No Hit
TATCCGGGGACTGATGGATTATTTCATAAAGAAAGAAAATTACAAA350.1091566866267465No Hit
CACTAGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA350.1091566866267465No Hit
GTCAGGGGGGCATGCATGAGTTTGAGGTTTCTGTGTTTAAAACTGA350.1091566866267465No Hit
CGTTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAATT350.1091566866267465No Hit
TATATTGGGCAGGGCTGTGGAGACTGAAGCAGAAGCAAGCAGTTTA350.1091566866267465No Hit
ATACATGGGATGGAAGGTTAGAGCCAGGCTGGTCCTTGTGCACCTG350.1091566866267465No Hit
TCTCATGGGGATTCTCTTCCTCAACAAGCAAGACCTGCTTGCTGAG350.1091566866267465No Hit
TCAACCGGGAGGAATACCGAGGGACACAAGGGGCTAGAGCCCCAGA350.1091566866267465No Hit
TGCCCAGGCAGTGTATCGCCAGCTGCTCCTGGGGCGGGACCAGCTC350.1091566866267465No Hit
TCACGAGGGAGACTTGCGCTGTGTCAAGATGCGCAGCGACGCCGGG350.1091566866267465No Hit
TCGCAAGGGATAGCCGAACATTACATGTTCTTGAAGGGACACGAAA350.1091566866267465No Hit
CGAACTCAGAAATCCGCCTGCCTCTGCTTGCTAGGTGCTTGGATTA350.1091566866267465No Hit
GATGCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.1060379241516966No Hit
ACGCCTGGGAACTAAAAGTCTCATCACAAACATTCCCACTGGCACC340.1060379241516966No Hit
GACAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.1060379241516966No Hit
TATCTCAGGGGATGCCGTCTCGTACCAACCTGGCAACTGGACTCCC340.1060379241516966No Hit
CACGCTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.1060379241516966No Hit
ACACTGGGGACTAAAGATCCTGCCAACATTGGAAGCTGTTGCTGCC340.1060379241516966No Hit
AGTTATGGGGTCCTCTGTGGGGAATCTCTCAGGCTAGAGCCGGAGA340.1060379241516966No Hit
CAAGCTGGGGGGCAGGAATGGGTTTGACGCTACATACAGGTTCATA340.1060379241516966No Hit
ACAGCTGGGATCTCCAGCCACTTGGCCACAAAGCACCTGAAGGAAG340.1060379241516966No Hit
AACACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.1060379241516966No Hit
TTGAAAGGGACAACAGGTGAAGGGGGGCAGCCAAGGTGAGGCGGTG340.1060379241516966No Hit
TTTAAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.1060379241516966No Hit
CCCAGTGACCATTTGCATCCCGTGTGTGCTGTTGTGCCCCAATCCC340.1060379241516966No Hit
GCAATGGGGGAAGAGAGAAAAGCCTGAAGAATTCCAGACAAGAGTT340.1060379241516966No Hit
TGCCACGGGGCCAGCAGGCTGTCGGTCGGGTCAGCTGTGTGTCCCC340.1060379241516966No Hit
TAAAAGGGGAGGCCCTTCTGAGGCACCAGAACAGGCCCGAGAATTG340.1060379241516966No Hit
CAGAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.1060379241516966No Hit
CCTCACGGGAACACATGTTTCCACATGGACACCTGCAAATATGTTC340.1060379241516966No Hit
TAGTCAGGGATTGCCCATGGTCCAATCTCATGAAGGAAATTCCTCA340.1060379241516966No Hit
GAGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC340.1060379241516966No Hit
GGCGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.1060379241516966No Hit
GTTCTAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA330.10291916167664672No Hit
CGCCCAGGGGACAGATCCCCAGCAACTAGAGTTAGAGACAGTTGTG330.10291916167664672No Hit
CTGATAGGGGCCATCAAAGCCTTGAAGAAAGGTGACATTGTAGCCC330.10291916167664672No Hit
TTTTCCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA330.10291916167664672No Hit
CTCAACCGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCC330.10291916167664672No Hit
TGCGCAGGGATAGCATTTGCCCAAATCTGCCTCCTGCAGCTGGGAG330.10291916167664672No Hit
AAAACCGGGACTTTGAGACAACCTGTGATGACATTAAAGATATCTA330.10291916167664672No Hit
GCTTTAGGGTTCCCTAAGCCTCCAGCTTAAGAGGCTGGTCTGCGAG330.10291916167664672No Hit
CGCTACGGGGTGTAGCCACCAACCAGGATGGCAGTCTGATCCTGAC330.10291916167664672No Hit
TCGTCAGGGACCTTCCCAATGCAGTGCTCAGCATTACGTAAGAATG330.10291916167664672No Hit
CAACATGGGGGAACCCCTGGTCTACAAACATGCCCTATGCCACCTT330.10291916167664672No Hit
TCACGGGGGAGTACGGATTCCACGTTTGAGTCCCAACATCTCCAGT330.10291916167664672No Hit
TGTGCTGGGGGAAAACAAGGTCACGGATCTATAAGGACCAGGGAGT330.10291916167664672No Hit
GTTCGCGGGGAGTTGGGGCCGTGTTCCTGTGTCCGCTGCTGGGTCA330.10291916167664672No Hit
TGGCATGGGACGTTCTCAGCACTCAGGACTACCCACACTCAGAAGT330.10291916167664672No Hit
GCTATAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA330.10291916167664672No Hit
ATAAAGGGGCAGCCTTTCTTCCAGAGTTCCTGACTAGCTGTGATGG330.10291916167664672No Hit
CCCATAGGGGCTCATAGACCTATCAATTTACTCTAAGAATACAAAC330.10291916167664672No Hit
CGTTATGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA330.10291916167664672No Hit
ACCTGTGGGTATTTAAGCCCTAACTCAGCCAACCTTCCTTACGGCA330.10291916167664672No Hit
TGCAGCGGGGGGTCGGAAAGCAGCTGTCGCAGCGACTTAACGTGGA330.10291916167664672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)