FastQCFastQC Report
Sat 31 Dec 2022
SRR5843559.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843559.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30372
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC580.19096536283418938No Hit
TCGCATGGGGGATGAGAATGGCCTGTGGCTTATCTACCCAGCTCTG520.17121032529961805No Hit
TGCGCAGGGATAGCATTTGCCCAAATCTGCCTCCTGCAGCTGGGAG500.16462531278809428No Hit
GCGCCAGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA500.16462531278809428No Hit
AACGCAGGGGCAACAATAACCAAGATAACAAGGCGTCGCCACGAAA450.14816278150928486No Hit
TTTGGTGGGATCTGCGGCAAGGGCCTGAGCGCAACGGTAACAGGGG450.14816278150928486No Hit
TTATATGGGAATCTCCCAAGGTAACCTTTGTCACCAAGAGTGGGCC440.14487027525352297No Hit
CAACACGGGATGTCCACACCTGGTGCATCATGGAGGCTAGGAAAGG440.14487027525352297No Hit
CAACATGGGGGAACCCCTGGTCTACAAACATGCCCTATGCCACCTT440.14487027525352297No Hit
AGCGTAGGGCAGTATGTTACAGAGAAGGTCCTGGCTGCTGTATACA440.14487027525352297No Hit
GATACAGGGATTTCTGTGAAGGGACTGCAGTGCATATGTGCATGCA420.1382852627419992No Hit
ACACTGGGGACTAAAGATCCTGCCAACATTGGAAGCTGTTGCTGCC420.1382852627419992No Hit
GAAGACGGGGGAGCCGAAGAAACAGGATGCTGAGAGTCTTCAGCGG420.1382852627419992No Hit
TATATTGGGCAGGGCTGTGGAGACTGAAGCAGAAGCAAGCAGTTTA420.1382852627419992No Hit
TCAAGGGAGCCGCTGTGCTGTGTGTCCTTCATTCAGTGTCAGGTGG420.1382852627419992No Hit
TCAAGGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA410.13499275648623732No Hit
CCTCAGCATTTTCTTTCTTTAAAAAATTGGGTGGGATTAATATTAT410.13499275648623732No Hit
ATCTATGGGGATGCTGAAATTACCATAGTGACTATTAATTTTCAGC410.13499275648623732No Hit
ACTTCTGGGGACGCGAATTGGGGACATTCAAATGAGCATCCTAGTC400.13170025023047544No Hit
TCTTAAGGGACCCAGGATGAGGTTGCTGCTTCTGCCATCCTGACTG400.13170025023047544No Hit
AGACAAGGGGGCCTGCAGGCTGCTGGATGCTCTGGAGTATCTCCAT400.13170025023047544No Hit
GCATTAGGGAGAGAGACACAGTTTTGTCAAGGAAGTGAAAACGGAT400.13170025023047544No Hit
CTTCTAGGGATTGGAAGCAGAAATATAGTACGATAGTGCAATAGCT400.13170025023047544No Hit
CTCGAAGGGATGATAATGAAGTACGGAACTGGGAACTGGGGTCGTT400.13170025023047544No Hit
AATTTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC400.13170025023047544No Hit
TATGCCGGGCGGGGGCCTGGCGGCGGCTGCGTCTGCTGGCCCGGCG400.13170025023047544No Hit
CGAACTCAGAAATCCGCCTGCCTCTGCTTGCTAGGTGCTTGGATTA400.13170025023047544No Hit
GACACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC390.12840774397471355No Hit
GCACTTGGGGTTTATGGATAGGTCAAGTTTACTGCAAGAGAGCTGC390.12840774397471355No Hit
AAAACCGGGACTTTGAGACAACCTGTGATGACATTAAAGATATCTA390.12840774397471355No Hit
AATAAAGGGGAGTGGGAAATCATCAACAATACCTTCAAGGGCATGT390.12840774397471355No Hit
GCAGATGAGACCTGATAACTCAAAGCCTCCTGTGTATGGTGCCTGC390.12840774397471355No Hit
TGGCATGGGACGTTCTCAGCACTCAGGACTACCCACACTCAGAAGT390.12840774397471355No Hit
AGCTAAGGGATACAAGTACGGTTTACTGGAAGTGAACTTTTATTGT380.12511523771895167No Hit
AGTTGAGGGGTACGTTTAGTGTTTCGGAAGAGAGAAATCATCAAAG380.12511523771895167No Hit
AGCTTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT380.12511523771895167No Hit
ACACTAATAATCGGAGCCCCAGATATAGCATTCCCACGAATAAATA380.12511523771895167No Hit
TCATTAGGGACCAGCAAGGAACACGAACTTCCCGGGTACACACGGC380.12511523771895167No Hit
CCACGTGGGGCAGACCGGCAAGTCAGGGTGAGCCCCTGCCACTCAA380.12511523771895167No Hit
ACGCATGGGATGGGGTGGGGGGTGATTGGCAAAAGGTAATGTGTTC380.12511523771895167No Hit
GACCCGCGCCGGGGGGGTGGGCCATGGCGGAGATCAGCGACCTGGA380.12511523771895167No Hit
ACATATGGGGGGAATTCACTGTCCTTTCATCCATAAGCGGAGAAAG380.12511523771895167No Hit
CATATCGGGGACAGAGGCGGAGCTAGCTCTGATTGCCACACCCCCG380.12511523771895167No Hit
TCACGAGGGAGACTTGCGCTGTGTCAAGATGCGCAGCGACGCCGGG380.12511523771895167No Hit
TTGCATGGGAGATCAGGAATTCAAGGGTATCCTCAGGCTCCATAAT370.1218227314631898No Hit
ACTGCTGGGACCATGATAACTGAGCAACTGAAGAAGACCTACTTCA370.1218227314631898No Hit
CTGATAGGGGCCATCAAAGCCTTGAAGAAAGGTGACATTGTAGCCC370.1218227314631898No Hit
ACACGACGGATGTCCATGAAGGAGGTAGACGAGCAGATGTTAAGTG370.1218227314631898No Hit
CAAATAGGGAACCTGCCGGCTGATCGTTTTTAGGATATTGTGAGTA370.1218227314631898No Hit
TTCCTCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA370.1218227314631898No Hit
GCCCCAGGTTACAAGGTCTTGGCACAATTACATGTGCAACTGCGTC370.1218227314631898No Hit
CGCTTGGGGCAGTATGTGCTGAGCACGAGTTCCACAGTGTCCTGGT370.1218227314631898No Hit
TGACACGGGAGAGGAAATGTGGGTAAACCTTCCCACTTACCCGGGA370.1218227314631898No Hit
GCCATAGGGGAGCGGGGGGGGGTACCATCCTCATAGCCCCAGAGAG370.1218227314631898No Hit
GAAGTAGGGGGGGCCGAGGGGCGGAGCCTGGCCGGCAGCGTTTCTG370.1218227314631898No Hit
CGCCACGGGAGTGCAGCGGCAGCAGCAGGGGAAGATGGCGGCGGCT370.1218227314631898No Hit
CTACACGGGATACCAGTCATGACAAATAATTACGAAGAAAATATTC370.1218227314631898No Hit
GGCGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC370.1218227314631898No Hit
CTGGGTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA360.1185302252074279No Hit
TTCATCGGGAGGCAGGCTTTGGTTGAAGAAGCCGCCCCACCTGCTA360.1185302252074279No Hit
ATCACCGGGGTGCACCCCGTGGGTCATGGTGCTGGGTCGCGGGTCG360.1185302252074279No Hit
TACAGCGGGGGCGACGGTCGGGGTCTCCTTGAAGCGCGGCTTCCCG360.1185302252074279No Hit
ATACCGGGACCCCACAAGCCTACCATCACGCCCCCTTCAGAGCTCA360.1185302252074279No Hit
CAGTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT360.1185302252074279No Hit
TGGCTCGGGATGGAGAAGTAATTCAGCTACAGGGTGACCAGCGCAA360.1185302252074279No Hit
GCAATGGGGGAAGAGAGAAAAGCCTGAAGAATTCCAGACAAGAGTT360.1185302252074279No Hit
CTCATCGGGGTTTCTTGAATCCAAAATGCCACATTTCCTCCTGGGA360.1185302252074279No Hit
GTTCGCGGGGAGTTGGGGCCGTGTTCCTGTGTCCGCTGCTGGGTCA360.1185302252074279No Hit
CCCATAGGGGCTCATAGACCTATCAATTTACTCTAAGAATACAAAC360.1185302252074279No Hit
CCTCACGGGAACACATGTTTCCACATGGACACCTGCAAATATGTTC360.1185302252074279No Hit
GAGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC360.1185302252074279No Hit
ACCTGTGGGTATTTAAGCCCTAACTCAGCCAACCTTCCTTACGGCA360.1185302252074279No Hit
ATTCAGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA360.1185302252074279No Hit
TGTTTTGGGGATCTCCAATTAGGGACAGAAAACACAGCATAATTCA350.11523771895166601No Hit
TAATAGGGGAGTTATGATCCTGTCTAAATAAAAGAGAAACAAACAC350.11523771895166601No Hit
ATTACAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA350.11523771895166601No Hit
GTCAGGGGGGCATGCATGAGTTTGAGGTTTCTGTGTTTAAAACTGA350.11523771895166601No Hit
GTATTAGGGACAACAAGGGGTTCAAGGGTGAGAAGGACCATTGGCG350.11523771895166601No Hit
AGCTTTGGGACCAGAATGAATGAAGAGCAGATAGCTACTGTCTGCC350.11523771895166601No Hit
ATTGCAGGGGTGCTTTCCTGGATTCCTGATGAGTTCTGCCATTTTC350.11523771895166601No Hit
CGACTTGGGAGAAACTGACAGTGAGCACCAACTGAAGGCTTTTACA350.11523771895166601No Hit
TATGTAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA350.11523771895166601No Hit
CCACCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA350.11523771895166601No Hit
TTAGCAAGGGGTAGCATGGGTGGTTCATCAGAGCAGTGGTGGCTCT350.11523771895166601No Hit
GGCTACGGGAGAGTACTCAAGAGTTTCTGTGCCAGTTTCTAAATCA350.11523771895166601No Hit
ATCGTCGGGACCCTGAAGGAAGCTGTCACAGAGTGCCTCCGCCATA350.11523771895166601No Hit
ACGCCTGGGAACTAAAAGTCTCATCACAAACATTCCCACTGGCACC340.11194521269590413No Hit
CGCTCAAGTATGGGAAGCGGCTGCTGGTCGTGCACTATGAGGAGCT340.11194521269590413No Hit
CGCAGGGAGCCAAAAGTCCATACACCCATTGCCAGGCACTCCCATA340.11194521269590413No Hit
GTAACTGGGGGTTAAGCGGAAGTCGGGCCTCTTTTTCGTGACGCCT340.11194521269590413No Hit
GTCTATGGGCCCACCCCGCGATGGTGCTCATGTTCGGCAGGCCTGT340.11194521269590413No Hit
CTACCCGGGACGAGCAAGCTGAGAGCGACATCATGAAGAGGCAGCC340.11194521269590413No Hit
CCGTGCGGGACATCCTCAACACTCACTCAGAGAGGGGCATTGAAGA340.11194521269590413No Hit
TCTTCTGGGAGTGAGAATTGGTGGGTGGTAACCATCCATAGTATAA340.11194521269590413No Hit
TTATTCGGGGGCTTCTGAAGTGATTTCCGCTCCTTTTTCCTGCGCG340.11194521269590413No Hit
GGTTATGGGGGGAGTTGCGGTATCAACTTGGTGACCCTGAAAGTGG340.11194521269590413No Hit
TCACATGGGGATAGAGAATTGACCAAGAAAAATAAAGAAATCTGTT340.11194521269590413No Hit
GGCACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.11194521269590413No Hit
TTGTTAGGGGCTCCATCCAATAGCACAAAAGCTTATAAAGTCACCT340.11194521269590413No Hit
TCTCATGGGGATTCTCTTCCTCAACAAGCAAGACCTGCTTGCTGAG340.11194521269590413No Hit
GTTAATGGGCTCAGGCAGCACCCTCCGCTGCCTCACTCCTTGTCCC340.11194521269590413No Hit
TTCTTTGGGATGTTAAGAACTTGCCGTTTTTATACGTACTGAGGAG340.11194521269590413No Hit
GAACTGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT340.11194521269590413No Hit
TACAGCGGGACTGTGGCAGGGACCATATTTTCCTGTACAAATTACT330.10865270644014224No Hit
ATCTTGGGGAACATCCGGAGAGGAATCGAGAATTACTACGATGATC330.10865270644014224No Hit
TTCTAAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT330.10865270644014224No Hit
TAGTTGGGGATCACCCAACAGTGGAATTTTAAAAGGGTCAACAAGG330.10865270644014224No Hit
CTTCACGGGGGTTGGGAGCTGGCGACAGAACCTGGGACGCGGAGAG330.10865270644014224No Hit
GCTCAAGGGGCTATCACTTGTGTTTGCATATGCTGCACCTGTGAGT330.10865270644014224No Hit
AGTTATGGGGTCCTCTGTGGGGAATCTCTCAGGCTAGAGCCGGAGA330.10865270644014224No Hit
GCTTTAGGGTTCCCTAAGCCTCCAGCTTAAGAGGCTGGTCTGCGAG330.10865270644014224No Hit
TTGAAAGGGACAACAGGTGAAGGGGGGCAGCCAAGGTGAGGCGGTG330.10865270644014224No Hit
TAGCGCGGGGCCCATGCAGGAGCATCAGTAGACCTAACAATTTTCT330.10865270644014224No Hit
TTCTATGGGCATCTGTCCTTATAGCTCATTAGGAAGAGAAACAGTG330.10865270644014224No Hit
AGTTATGGGATTGATATCCACGATTATCATTTTTCATTACCTCTTT330.10865270644014224No Hit
ACTCACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC330.10865270644014224No Hit
CGGCGGGAGGGAGCACAGTGCCTGTATAGACAAAGCGGGGCGGAGG330.10865270644014224No Hit
CGAGCCGGGAGAGCCGCGGAGGCGGAGCAGGCGCTGCGGCAGGAGG330.10865270644014224No Hit
GTTCTAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA320.10536020018438036No Hit
TCACGTGGGATCCCCAAATAACAGCAACCAACCAGTATTATCTGAT320.10536020018438036No Hit
AACTTAGGGATCCAGCCAGCTGGCGGTGACCGTGGGACCTGGTGAA320.10536020018438036No Hit
GGCTCGCGGGATCTTTCTGAAGCTTATGAGTATAAACTGGTTTTAA320.10536020018438036No Hit
CACTAGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA320.10536020018438036No Hit
TAGCCGGGACTGTAAATACAAATTTAAGCCTAGATTTAATATAGTT320.10536020018438036No Hit
CAACAAGGGAGAAGGCTAGCCTGGGGGCCAGAGAGCTGACCCTACG320.10536020018438036No Hit
CACGCTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA320.10536020018438036No Hit
GTTTCTGGGGAAGGGGCCAAAGCTGAAGTTGGAGACCAAGTCCTTG320.10536020018438036No Hit
GAGCAGGGGGGATGGAGGACATGCCTACATTGCAGGCCAGTGTGGT320.10536020018438036No Hit
ACTCTTGGGATTTCCATCCAGAAAGATAAGGATCAGGAAATTATTG320.10536020018438036No Hit
CCCTGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA320.10536020018438036No Hit
GTAGAGGGGATCATTGACCCCTCCAAAACCCAACACATTCCCACAT320.10536020018438036No Hit
CTACGAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG320.10536020018438036No Hit
CATCTCGGGGTACAAGAACATGAAAAGCCTTCCTTCTATTTCTTCC320.10536020018438036No Hit
TCAGCTGGGGGAACGATGGTAGGTAGGTTGGAGGCTGTCTGCAAAC320.10536020018438036No Hit
GGAGGAGGTGACCCCAGGAGAGGACGGCGTCTATGCTTGCCTAGCA320.10536020018438036No Hit
AATAACGGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAA320.10536020018438036No Hit
TCCACTGGGGGGCTGGCTGCTTATGGAGCTGGCCATAACATTGCTA320.10536020018438036No Hit
GTTCCAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA320.10536020018438036No Hit
TGTTAGGGGACCTCAAGTCGTGCATTTATAATGCGCGGACGGATCC320.10536020018438036No Hit
CTTACAGGGACTTTTATAGACTTTAATACATAAGTAATTTAAATTA320.10536020018438036No Hit
TTAAGCGGGGACCAGAGTGGTTCCTATGCCTCCACCCACTCATCAG320.10536020018438036No Hit
GGGTGGGGGGAGTCCTTCCCTTGGCAATAAGCAACTGATTATGCTG320.10536020018438036No Hit
TTAGTAGGGGGTGACTGAGAGTCCGAATCCGGCCCTCACCTTCTGT310.10206769392861847No Hit
GATGCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC310.10206769392861847No Hit
CCAACCGGGCCGACAGACTGCGGGGCGGACGGTGGACGCGGTTTAG310.10206769392861847No Hit
TCATCAGGGTATATCCCTAGTTACCTGGACAAAGACGAGCAGTGTG310.10206769392861847No Hit
TCATCAGGGAACCCAAGCGGGTGTTCCAAGGAGCGATGTAGTTGCT310.10206769392861847No Hit
ACGCCGGGGCGTGCATCCCGGGCAGGATCACTGGAGGCCAGAGAAA310.10206769392861847No Hit
GCCTAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC310.10206769392861847No Hit
TCGCCTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT310.10206769392861847No Hit
TTTTGCGGGATGACAACATAGCTGACAGCAGTAACTTTGCAGGAAG310.10206769392861847No Hit
CTCAACCGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCC310.10206769392861847No Hit
ACTTGGGGGACTTGGAGGATTCTGGGTGGAAACTTCAGTCATCTGA310.10206769392861847No Hit
TTATATGGGAGGAAGAGAAACAGTGTTGTCAGGATCATCTCACTCC310.10206769392861847No Hit
ACTCGTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA310.10206769392861847No Hit
CGCTACGGGGTGTAGCCACCAACCAGGATGGCAGTCTGATCCTGAC310.10206769392861847No Hit
CCCAGTGACCATTTGCATCCCGTGTGTGCTGTTGTGCCCCAATCCC310.10206769392861847No Hit
TGCCCTGGGACATCAAGCTAGGAAGAGACCAGGGAGTTAAAAACAG310.10206769392861847No Hit
GCCCTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA310.10206769392861847No Hit
TTTCTAGGGACGTGGAGCATGAAGAGAGACCAAAAGCTTTAAATGA310.10206769392861847No Hit
AATCGCCATAGCCTTCCTAACATTAGTAGAACGCAAAATCTTAGGG310.10206769392861847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)