FastQCFastQC Report
Sat 31 Dec 2022
SRR5843558.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843558.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43137
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA770.17850105477896006No Hit
CGCTAAGGGGCTGAGAAGAAGGAGGCGTATTCTCTTTCAAGTGGCA680.15763729512947122No Hit
ACGCTGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT590.1367735354799824No Hit
GATTGGGGCGTCTAGTGAAAATTTATCTTCGGTTTGAATTCTCTGC580.1344553399633725No Hit
TTGTTTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG570.13213714444676264No Hit
GGGCCGGGGGCCATGCGGGGCCAAGGCCGAAAGGAGAGTTTGTCCG540.12518255789693303No Hit
GTATTGGGGACGTCATGTACTATGAGATGTCCTACGGATTGAACAT530.12286436238032315No Hit
ACATGCGGGAAGAAAGAAAAAGTGAATGTTGACATCATTAATTTTG520.12054616686371328No Hit
AAAGCCGGGATTTCAGTATGAGGAAAAACAACAACAAACCGAAGTG510.1182279713471034No Hit
GAGCCAGGGCCTTTCCGCTCGGCCGTTCTCCTGTATAGGAGGCAGC500.11590977583049356No Hit
AACGACGGGGTGATCAAAATCAGGAAGTCAGAATAACTAACCTGTG500.11590977583049356No Hit
CGCTGGGGATCTAGCTACGGGATGGTAGATAGACTATAGAAAGGCA500.11590977583049356No Hit
GCCTATGGGGTTCCTGATTAGGGCAAACCTCATGAGAGACAGACAG490.11359158031388368No Hit
AATCCCGGCGTCTCTGAGCTACCCTCCAGTGAAGAGAAGTCCCCTG490.11359158031388368No Hit
TATCATGGGGACACAGGTAAGCAGCGCTGTCCCCGCGCCGTCCCCG490.11359158031388368No Hit
TTAACCGGGTATGATTTCACTATAATTCAATTACACTATTAACCCT490.11359158031388368No Hit
CACGCCGGGATGTACACGGGGCACAGACATCTATGCAGAAAAACAA490.11359158031388368No Hit
CTTATTGGGGATCTCTCGCAGGGCGATCTGAATCTGGGACCAGCAG480.1112733847972738No Hit
GACTCAGGGGCTGCTCTTCAGGTGGTGCTGGGATTGCCCTTCCTGC480.1112733847972738No Hit
GGCTAGGGGAGACACACCCCGATGTCGAGAGACCTCAGGAGTAGAG480.1112733847972738No Hit
TTAAGTGGGGGACTGCTGTGGCATAGCTGGTCCTTTGGAGCAGTTT480.1112733847972738No Hit
TTATTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT480.1112733847972738No Hit
TGATGCGGGCGATCTTTGAACGGGGCCTCAGGGGGGTACTACCACC470.10895518928066394No Hit
TGTTTGGGGATGGGAGAGCATATATCCACACAAGTTCTCAGGGTCT470.10895518928066394No Hit
GACATGGGACCCACTACTTGATTATTAGGAATAACTCAAATCTTTG470.10895518928066394No Hit
CCACTTGGGAATTACATGATATTTTTATCACACTATGTCAGGACAA470.10895518928066394No Hit
ACAGCTGAGTACCCACACCCACGTGGTGGATATCACTCGGAGCAGC460.10663699376405407No Hit
GTAAATGGGGGGATGTTGGGCAGGGTGCACTGGATGATGGTGGTGG460.10663699376405407No Hit
GTGAACGGGGCTGCTGAGCTTGCACCACACTGTATCCGCCCAACAT460.10663699376405407No Hit
AACATTGGGAGCTGCTGTGGCTAAGGCAGGCCTGATAGTCCAGGCA460.10663699376405407No Hit
CACATAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT460.10663699376405407No Hit
CATAGCGGGAAGTCTCCATCCCAGAAGAAGCCAGTGGCTAAGAAGA460.10663699376405407No Hit
ATTCAGGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCT460.10663699376405407No Hit
TGTTGAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCT450.1043187982474442No Hit
TATAAAGGGGAACAGCTACTGCTGCCAAAGCTCCTTCTGCAACTTC450.1043187982474442No Hit
CTTGACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC450.1043187982474442No Hit
GTATGTGGGGAGTCGAGCCCTTGAGCAAAAAGCCTACCCATCTGTA450.1043187982474442No Hit
CTAATCGGGGAATTAATGCTTCATGAAATTCACCACACCTAAGAGG440.10200060273083432No Hit
GGCACGGGGACTGGAGAAACAGGGTCATGATGGTGGCAAAGAAATT440.10200060273083432No Hit
GCAGCCGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTT440.10200060273083432No Hit
GCAATTGGGGGGCCCCATTGAGTGCCTGAAGGAGTTTGTCACCCCT440.10200060273083432No Hit
CATCCAGGGGTTCAGTGATGGAGCCTATGAAACTGACCTTCAGCCT440.10200060273083432No Hit
GAGCTAGGGCGGTGCAATCTCAGCTAAACCGACGCAGTTTTGCTCC440.10200060273083432No Hit
CGTAACGGGTATTTTGTCCAGTCTTAATTTTTCAGGAGTCTTTCTT440.10200060273083432No Hit
GCTGTATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC440.10200060273083432No Hit
CGGTTAGGGGGGACGAGAGCGAGGCTCCGGACCGATTCGGCTGCTG440.10200060273083432No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)