FastQCFastQC Report
Sat 31 Dec 2022
SRR5843557.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843557.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41269
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.150233831689646No Hit
CGCATAGGGGGGTGAAATAAAAATTTGGAGGTTGAAAGGGTGTCAC590.14296445273692118No Hit
CGCTAAGGGGCTGAGAAGAAGGAGGCGTATTCTCTTTCAAGTGGCA570.1381182001017713No Hit
ATATGCGGGGAAGCCTCCTGCTGCTGCTCCTCCACCTCAGTCAGTG570.1381182001017713No Hit
ACGCTGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT560.13569507378419637No Hit
CTCGCAGGGAATGTTAGCTGGCTATCATGTGCACTCCTTGCAGCCC540.1308488211490465No Hit
GGGCCGGGGGCCATGCGGGGCCAAGGCCGAAAGGAGAGTTTGTCCG540.1308488211490465No Hit
GCAGCCGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTT540.1308488211490465No Hit
GGCTAGGGGAGACACACCCCGATGTCGAGAGACCTCAGGAGTAGAG540.1308488211490465No Hit
TTATTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT530.12842569483147157No Hit
AAAGCCGGGATTTCAGTATGAGGAAAAACAACAACAAACCGAAGTG500.12115631587874677No Hit
CTTATTGGGGATCTCTCGCAGGGCGATCTGAATCTGGGACCAGCAG480.11631006324359688No Hit
CGATACGGGATACAAAACCGACAACTGTCACCAAAGCTTATAAAAC480.11631006324359688No Hit
TTCTAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT480.11631006324359688No Hit
GCCTTATGCAATTCGAGAGGTGAACATCAACAAGTTCTGCAGGATC480.11631006324359688No Hit
TGTGTTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC470.11388693692602195No Hit
TTGTTTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG470.11388693692602195No Hit
GATTGGGGCGTCTAGTGAAAATTTATCTTCGGTTTGAATTCTCTGC470.11388693692602195No Hit
GTATCCGGGAGTCGGTGAGGTGGGACTGGTGACTCTCAGAAGCTCC470.11388693692602195No Hit
GACTCAGGGGCTGCTCTTCAGGTGGTGCTGGGATTGCCCTTCCTGC470.11388693692602195No Hit
CTTGACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.11388693692602195No Hit
GAGCCAGGGCCTTTCCGCTCGGCCGTTCTCCTGTATAGGAGGCAGC460.11146381060844703No Hit
CCACAGGGGACTCCATTGCTTATGGTTCAGATGACCAATCATTTGA460.11146381060844703No Hit
GCTATAGGGGGTCATTGTTGTGGGAAACCCAGCCAATACGAACTGC460.11146381060844703No Hit
TTCTAGGGGATGGCGAAAATGAAGGGAGGAACTTGCGATCTAACAG460.11146381060844703No Hit
ACTACAGGGACTGGGAGAAAAGAAGAAAGAGGGAGTCATTCTTACC460.11146381060844703No Hit
TAAATAGGGATACCACTGACTTCATCTACCAGCTCTACTCAGAGGA460.11146381060844703No Hit
TTTGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC450.10904068429087209No Hit
TGCTACGGGCATTCAAATTGTTCTTGCAATATTTGAGACTATCAGT450.10904068429087209No Hit
GCAAGAGGGGCTGTGTGTAGCCCCTGAGAACTTCATGATTACCCAT450.10904068429087209No Hit
GTATTGGGGACGTCATGTACTATGAGATGTCCTACGGATTGAACAT450.10904068429087209No Hit
GTGAACGGGGCTGCTGAGCTTGCACCACACTGTATCCGCCCAACAT450.10904068429087209No Hit
GCACTCGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA450.10904068429087209No Hit
AGAATAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA450.10904068429087209No Hit
GCTGTATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC450.10904068429087209No Hit
TATAAAGGGGAACAGCTACTGCTGCCAAAGCTCCTTCTGCAACTTC440.10661755797329714No Hit
TGCTTAGGGGCACCGCGCTTGCGCGCCCAGCCCCACTGCTTCGACC440.10661755797329714No Hit
TCTCTGGGGGACATACTTCAGAGGGAGAAGAGGCAGAAGGAGCCGA440.10661755797329714No Hit
TGTACCGGGATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCT440.10661755797329714No Hit
TTAACCGGGGAAAACTGCATACTCATACTTCTATGAGGCATTCGAA430.10419443165572222No Hit
CTCTGGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT430.10419443165572222No Hit
CTTACGGGGCCCAGACTATCTGAAGCACACTCCTTCCCACTGCACA430.10419443165572222No Hit
AACCGGGGATACCCAGGCCACTGAGTCTTCTGGCCGAACTCCTAAG430.10419443165572222No Hit
GTCCAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA430.10419443165572222No Hit
TACGAAGGGAGGGGTGACCCAGATATTGCTGGGGCTTGTGAGCTGT420.10177130533814728No Hit
GACCCCGGGTCGATTATAACAACGGTGCAATCTCAGCTAAACCGAC420.10177130533814728No Hit
TGCAAGGGAACTTAGCTGGACTGCAGCCTTCTCCGCTGGAACTCGC420.10177130533814728No Hit
CGCTAAGGGGATATTAGTCAGACTCAAAGTCTATGCATCTCAATGA420.10177130533814728No Hit
GACACTGGGGGGCGAACAGCAACGTTATAACGGCCACTCAGTGGTT420.10177130533814728No Hit
CGCACCGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC420.10177130533814728No Hit
CAACGTGGGACTCTTGGGGGAAATTGACTCCCCTTTTTCTGAAGCT420.10177130533814728No Hit
CTCACAGGGTCACATGTAGTTACTTACTACTCCGGAAAAAAAGAAC420.10177130533814728No Hit
CATCTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC420.10177130533814728No Hit
CGTTAAGGATTGAAGAGCTCAGGGCCAAGATGGATTCCCTCTCTTC420.10177130533814728No Hit
CACAAAGGGAGGTGGGAGCTGAGAGAAGTGAGAGAGAACTGGATGT420.10177130533814728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)