FastQCFastQC Report
Sat 31 Dec 2022
SRR5843550.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843550.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49780
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTAAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC910.18280433909200483No Hit
ATAAAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC760.15267175572519084No Hit
CGAGCCGGGAGACAGACGTGCGCGCGTGCATGCTGTCGCTGCCGGG740.14865407794294896No Hit
TGGCAGGGGGAGGGCGAAAGTCGGCCACTTCCTGGAGACCACAGGT740.14865407794294896No Hit
TTTGCCGGGTGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC730.14664523905182805No Hit
TGAACTGGGGATCTGTAAAGGGGGCGCGCGATTCCGCAGAGCGCCT720.1446364001607071No Hit
AATGTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC710.14262756126958617No Hit
GCAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC700.14061872237846523No Hit
CAATCAGGGTCTGGGTTTTAGGACATTGTGAAGCATGACTGACTAA680.13660104459622338No Hit
CTGCTGTAGGGGGACGGCTTAGGGCGGAGCAGCAACATGGCGGCCC680.13660104459622338No Hit
AACGTAGGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATA670.13459220570510244No Hit
AGCCCCGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC670.13459220570510244No Hit
GTGCCCGGGTGCTCTACGACTACGAGGCAGCTGACAGCAGTGAGCT660.13258336681398153No Hit
TGCTTTGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT660.13258336681398153No Hit
AACAAGGGTATGCCACAACTAGATACATCAACATGATTTATCACAA650.1305745279228606No Hit
TGCTCAGGGGGATTACATCTAATTGAGTTCTTTGCCAAAGGGATCT650.1305745279228606No Hit
GCTATAGGGAGGGGAAGCTGGAAACGAACCCCACTACCTGGGGTCA650.1305745279228606No Hit
ACACATGGGTGGCAGTACTTATCGCTAACTCCCTGACTGATGGCAT650.1305745279228606No Hit
ACGCGGGGGAGTATAAAGGGCGCGAGGAAGGCGGGAGACGGCGCAG650.1305745279228606No Hit
GTGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.12856568903173965No Hit
CATTCAGGGGCCTCTTAATAATTATTGTACCCCAAGTCTTTAACCC630.12655685014061874No Hit
ACTGGTGGAAAATGATGTCAGAAACTTTGAATTTTTAAGAAAGGCT630.12655685014061874No Hit
CATACAGGGGGAAGAGTAGCTAAGGGTCCATGACAGGCAAGGACAT620.1245480112494978No Hit
TATCATGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT620.1245480112494978No Hit
CGCTAGGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC620.1245480112494978No Hit
GGTAACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC620.1245480112494978No Hit
TAAAGCGGGTCGAGAGTGCCCCTCCCTTTCCTCACAGATCATTGAG610.12253917235837686No Hit
CACGCAGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC610.12253917235837686No Hit
CTGCAAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA610.12253917235837686No Hit
TACGAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC610.12253917235837686No Hit
CTTTTGGGGGGAGTCATGCAGGTTTTAAGAAACTCCGGGTCGTGGC610.12253917235837686No Hit
GCACATGAGTTCTGGGCCTGCCGAAGTCCTGCCGAAGCTAACAGAG600.12053033346725592No Hit
TGAACAGGGGGGAATTCCCCGGGCCAATTGCCTCTATAACTAGAGC600.12053033346725592No Hit
TATGTCGGGACTCTCTGCAAGGTCCTTCTGTCCAGGGCTCAGGGCC600.12053033346725592No Hit
TATGACGGGACCCTGTTCTGCATCAAATCAGAATTACGCCTTTTTA590.11852149457613498No Hit
AGCAACGGGAACTTCCACATGTTCGATGTGGGCGGCCAGCGCGATG590.11852149457613498No Hit
TCACCAGGGACACGGGACTGTGATCAAAATTAAGAGAGAAAGAGGT590.11852149457613498No Hit
ACAGCGGGGGGTTCGCATTCAGTGGGACAAGCAGAGCCGCCCTTCC590.11852149457613498No Hit
CTTTTCGGGGTGGAGTAGGTGGAGATGAGATTAACAATGGCAATTA590.11852149457613498No Hit
TTTTGCGGGTGTAGGACGAGTCGTCTTTGGACTCTTTGGAAAGACT590.11852149457613498No Hit
AAGCTGGGGGCGGCGGTGGTGGCGGCTGTCAGAGCTGGAGAGCGGC590.11852149457613498No Hit
GCAAATGGGACAGCGCCCTCGCCACCGCGTCTCTGCTGCTTTTGTG590.11852149457613498No Hit
GCGCCAGGGATCCTAGTCACCGCGTTTAAAATGAACCTGCCGGCTG580.11651265568501407No Hit
CGTTTAGGGGGGCCCAGCCGGTTGCAGAGGCAAGTTCTGAGCCTGT580.11651265568501407No Hit
GTTTAAGGGAATGCATTGGGATGGAACTGTCCAAGATCACAATGCC580.11651265568501407No Hit
CTTCCGGGGACGGCCGGGCTGCTTGGGTGTCTGCTGGGCTGTGGTC580.11651265568501407No Hit
GCTCGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC580.11651265568501407No Hit
CCTAGTGGGTAGGGATGTATTGGTCAGGCCCCCTGCCTAGTGTCCA580.11651265568501407No Hit
TAAGCAGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC570.11450381679389314No Hit
TATGCTGGGGGTGTCTACTGACTGCAGTTCCAGTTACTCGCCCTTG570.11450381679389314No Hit
TACCGTGGGCTCAACAACATGGAGATTGGCACATCTCTGTATGATG570.11450381679389314No Hit
TGAAAAGGGGTCGGCACGAAGTGTCTTCCGATGCAGTGTCCAGTCA560.1124949779027722No Hit
TGGCGTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA560.1124949779027722No Hit
TAGTGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTTTT560.1124949779027722No Hit
CGCGCTGGGGGGAATTCCTCCTCATGTGAGCGGATCACTATCTACA560.1124949779027722No Hit
TTTAGCGGGGGAGAAGGTGAAGATGGCTGCCGCCCGGGCTGCGGCC550.11048613901165126No Hit
CGATGAGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC550.11048613901165126No Hit
CAGCCACGGGGGGCAGAGCAAGCAGGAAAGGGACATGCAAGGACCA550.11048613901165126No Hit
AACGCAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC550.11048613901165126No Hit
TGTCTTGGGGGCCCGGGACACGGGAGAAGCCGGGATTGGCGCCGAT540.10847730012053032No Hit
CCCACTTGTCACTACTCAGCTCAAGGACCAGAGACCTCAAGTGTCA540.10847730012053032No Hit
TTGTTTGGGGGCCCTTTGTTTCGCTGCGGTTGGCTTCCTGCTGATG540.10847730012053032No Hit
AATGCAGGGGAGGGAAAGACGACTAAAAGACAGGTCTCCTCACACC540.10847730012053032No Hit
CACATAGGGGGGGTAAAAGTCGCACGGAGGAGCAGCGTCTGTTCTG540.10847730012053032No Hit
AATTACGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT540.10847730012053032No Hit
ACTGCTGGGAAAATATTAATCATAAATGCATTTTTATTTTCTTCTA540.10847730012053032No Hit
TGAACAGGGAGGACAGGCAGGGCTACACAGAAAAACCATCCTGTCT540.10847730012053032No Hit
CGAACTGGGAACAAAATAGAGCAAGCTATGGATCTGGTGAAAAGCC540.10847730012053032No Hit
CACTGAGGGACTGAAAGTTCTGTGTCCGACATAGAGCAGCGTTATG540.10847730012053032No Hit
CGTCAGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA540.10847730012053032No Hit
GCCTCTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA540.10847730012053032No Hit
TCATTCCGGGGATCTAACGTAGGGGGGAATTCTGGACATTAATTAG530.10646846122940941No Hit
GGTAATGGGCATCATTGATTGTGTCGTGAGAATCCCCAAGGAGCAG530.10646846122940941No Hit
AGCAACGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA530.10646846122940941No Hit
CAGTTGGGGTCGCAGAGGACCGCCTTCAACAACAACGTGAGCGTGG530.10646846122940941No Hit
ACTCCTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC530.10646846122940941No Hit
TACTTGGGCCGGAAAAAAAGAACCTTTCGGCTATATAGGAATAGTA530.10646846122940941No Hit
ACAACTGGGAGAGTGTAGGTGCTCACTGCTTATTTCAGCCCTGGCT530.10646846122940941No Hit
TCATAGGGGGAAGCCTGCGCTGAGGAGTCGGTGGAGGTCGGTCCGG530.10646846122940941No Hit
AACAATGGGGTTGTAAGACTGAAGCAGGAAGGAAATCCTTACCGTA530.10646846122940941No Hit
TACACAGGGTATGAGGAGCAAGGAAGCAGCAAGGTCTTCCAGGGCA530.10646846122940941No Hit
TCACCAGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTTT530.10646846122940941No Hit
ACGTGCGGGGGGCGCTGGAGGGAGGACAGACTGCGGGCGGACGAAT530.10646846122940941No Hit
CGCTCGGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC530.10646846122940941No Hit
ATTGACGGGGTGTTTTCATAACAAAAAGTCCCATTAAGGGAGAAAT530.10646846122940941No Hit
CTCACTCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT530.10646846122940941No Hit
AAAATCGGGGCCACATGTGGAAGGCAGCTTTCACGGCTGGCCGCAT520.10445962233828847No Hit
CAATTAGGGTGACGGCACTGATGGAGGACACTATGACGGAAGTAAA520.10445962233828847No Hit
TGCACCGGGATTAGAAGTCCAAATGTGAATGGCTGCAGGGGTCAGA520.10445962233828847No Hit
TATTACGGGGAGGCGCGGGCCGGCGTGTCCTTGGGCTAGAGCGCGG520.10445962233828847No Hit
GCAAATGGGGGCCTCCGGGAGCCTGCGTGGTCTAGCCCTAGACCAG520.10445962233828847No Hit
GTATAGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGCAGAGCA520.10445962233828847No Hit
ACAAGGGGGCAGTTTGAATCGCGGTCCGACGGAGGAGTGGGCGCTG520.10445962233828847No Hit
CTCTTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC520.10445962233828847No Hit
CCTATAGGGCGATCTCTGCTAGGGATGACCCACCAAACTCATGCAT520.10445962233828847No Hit
ACGTCAGGGAGTCGCAGCGCCGGGTCCCAGAATCTAGTCCTACGCC520.10445962233828847No Hit
GAGAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATT520.10445962233828847No Hit
TTGGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.10445962233828847No Hit
GTTTCAGGGATTCCGGAAGAAACAGGAGTGCGGCGTGAACATGGGG520.10445962233828847No Hit
TATTAAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC510.10245078344716754No Hit
TAGGCTTGGGGGACCTGCTTCTCTAACTCCCGGCCTACACGGCAGG510.10245078344716754No Hit
GTTAAGGGAACGTCAGAAGTGGTCAGATTACCCTATCCTCTCCAAA510.10245078344716754No Hit
TAGCGCGGGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGT510.10245078344716754No Hit
TCAAGTGGGGCTCCAGCCTGCTGGCCCAAGGGTACTGACTCGCAGC510.10245078344716754No Hit
TTCCATGGGGGATGAGGATACCTTGGGCATCAGCTCCCCGGCTGCC510.10245078344716754No Hit
TCATAAGGGGACAATAGGAATTGAACCTACACTTAAGAATTCAAAA510.10245078344716754No Hit
CGCACCGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC510.10245078344716754No Hit
ACTCATGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAA510.10245078344716754No Hit
AGCTGCGGGGTGCTTTGTGTGTTCTTTACAACCCCCTGAAAACGGC510.10245078344716754No Hit
GCTTTTGGGGACAGCGGTGTCATCTGTCTAGGTAGCGGCTTCACCG510.10245078344716754No Hit
GATGCCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA510.10245078344716754No Hit
TCAAGAGGGAGCTCAATCTGCTTACGCCAAACAGTTTTAAAATCAC510.10245078344716754No Hit
TACTCAGGGCTCCTAGCCTTATCCAGGATGGTTAGCACCAGTCACA510.10245078344716754No Hit
TCTTTTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG510.10245078344716754No Hit
TCGCTCGGGGAGCATGAAGCCCAGTTGGTACAAAGCGACTGGAGAC510.10245078344716754No Hit
GTATTAGGGGAGACGTAATTCGTGAAGGAACCTACCAAGGCCACCA510.10245078344716754No Hit
ATCAACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA500.1004419445560466No Hit
GACTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAATT500.1004419445560466No Hit
GGCTCCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA500.1004419445560466No Hit
GCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCTGACTTAGCCGAG500.1004419445560466No Hit
ACCAACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA500.1004419445560466No Hit
CGCTCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC500.1004419445560466No Hit
GCGAATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA500.1004419445560466No Hit
ATTCATGGGGGTATCCCCGAAGGGGCTAAGATCGCCCAAAATGTCA500.1004419445560466No Hit
TTCACCGGGAGGTGTAAGAGCCAGCGCTGTGCCCCAAGCCGGACGG500.1004419445560466No Hit
TTTACGGGATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCTC500.1004419445560466No Hit
CTTTCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC500.1004419445560466No Hit
TGTGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAAT500.1004419445560466No Hit
TAGCGAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA500.1004419445560466No Hit
GTCAGCGGGATGGCACAAAGCTTGTTCCGTTAGCTGGCATAAGATT500.1004419445560466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)