FastQCFastQC Report
Sat 31 Dec 2022
SRR5843549.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843549.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47473
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGCCGGGTGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC900.18958144629578919No Hit
TTTTAAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC840.17694268320940323No Hit
GCACATGAGTTCTGGGCCTGCCGAAGTCCTGCCGAAGCTAACAGAG720.15166515703663136No Hit
AGCCCCGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC700.14745223600783605No Hit
ACACATGGGTGGCAGTACTTATCGCTAACTCCCTGACTGATGGCAT690.14534577549343836No Hit
TATGCTGGGGGTGTCTACTGACTGCAGTTCCAGTTACTCGCCCTTG680.14323931497904072No Hit
ATAAAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC680.14323931497904072No Hit
TGGCAGGGGGAGGGCGAAAGTCGGCCACTTCCTGGAGACCACAGGT670.14113285446464308No Hit
TGAAAAGGGGTCGGCACGAAGTGTCTTCCGATGCAGTGTCCAGTCA660.1390263939502454No Hit
TCGCTCGGGGAGCATGAAGCCCAGTTGGTACAAAGCGACTGGAGAC650.13691993343584774No Hit
GTGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.13481347292145007No Hit
TGAACTGGGGATCTGTAAAGGGGGCGCGCGATTCCGCAGAGCGCCT630.13270701240705243No Hit
GCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCTGACTTAGCCGAG610.12849409137825712No Hit
GATGTGGGGCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCT610.12849409137825712No Hit
TAGAAGGGGATGTCAAGCTCATTGCCGGCTTCCTTTTTACCTCCCT600.12638763086385946No Hit
TGCTCAGGGGGATTACATCTAATTGAGTTCTTTGCCAAAGGGATCT600.12638763086385946No Hit
GGGAAGGGGCTTCTGGGGAGGAAGGAGGGCATCCAGACTGACTGCG600.12638763086385946No Hit
GCAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC600.12638763086385946No Hit
TATGACGGGACCCTGTTCTGCATCAAATCAGAATTACGCCTTTTTA590.12428117034946179No Hit
CTGCTGTAGGGGGACGGCTTAGGGCGGAGCAGCAACATGGCGGCCC590.12428117034946179No Hit
TACACAGGGTATGAGGAGCAAGGAAGCAGCAAGGTCTTCCAGGGCA590.12428117034946179No Hit
AGCTGGGGGATCTTTAAATGGGGAGGCTAAGGACTTGTTTCGGAAG590.12428117034946179No Hit
GTAAGTGGGACTTCACCAGTGGCCTACAGGCTGGCCTCAAGCAGAG580.12217470983506415No Hit
CACTGAGGGACTGAAAGTTCTGTGTCCGACATAGAGCAGCGTTATG580.12217470983506415No Hit
AGCTATGGGGCTACTCTCGTGTGGGGTACTAGTATTTGATTACATT580.12217470983506415No Hit
AACAATGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG570.12006824932066648No Hit
TGCTCTGGGAGGCAATGGTTGTTCTCTTTAAAGAGGGAAGGGGTTT570.12006824932066648No Hit
CTTTTCGGGGTGGAGTAGGTGGAGATGAGATTAACAATGGCAATTA570.12006824932066648No Hit
CTGCACCTCGCGCATGCTGAAGCTGCTGGCACTGCGTCAGCTGCCT570.12006824932066648No Hit
AATGCAGGGGAGGGAAAGACGACTAAAAGACAGGTCTCCTCACACC570.12006824932066648No Hit
CCTAGTGGGTAGGGATGTATTGGTCAGGCCCCCTGCCTAGTGTCCA570.12006824932066648No Hit
TAGTTGAGGGCAAACACCTCATGATGTCATTTTCCTTATTGTTAAT560.11796178880626883No Hit
TTGTTTGGGGGCCCTTTGTTTCGCTGCGGTTGGCTTCCTGCTGATG560.11796178880626883No Hit
CACATAGGGGGGGTAAAAGTCGCACGGAGGAGCAGCGTCTGTTCTG560.11796178880626883No Hit
TACGAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC560.11796178880626883No Hit
GTGCCCGGGTGCTCTACGACTACGAGGCAGCTGACAGCAGTGAGCT560.11796178880626883No Hit
TTTTGCGGGTGTAGGACGAGTCGTCTTTGGACTCTTTGGAAAGACT560.11796178880626883No Hit
TTTAGCGGGGGAGAAGGTGAAGATGGCTGCCGCCCGGGCTGCGGCC550.11585532829187117No Hit
TACTTGGGCCGGAAAAAAAGAACCTTTCGGCTATATAGGAATAGTA550.11585532829187117No Hit
ATACATGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG550.11585532829187117No Hit
GTTTAAGGGAATGCATTGGGATGGAACTGTCCAAGATCACAATGCC550.11585532829187117No Hit
ACAAGGGGGCAGTTTGAATCGCGGTCCGACGGAGGAGTGGGCGCTG550.11585532829187117No Hit
GCTCGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC550.11585532829187117No Hit
CTTTTGGGGGGAGTCATGCAGGTTTTAAGAAACTCCGGGTCGTGGC550.11585532829187117No Hit
TAAGCAGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC540.1137488677774735No Hit
ACAGCGGGGGGTTCGCATTCAGTGGGACAAGCAGAGCCGCCCTTCC540.1137488677774735No Hit
TGCTATGGGCGATCTGTCTCGGGGGAAGTGAAGCGTTTTGAGCTGC540.1137488677774735No Hit
GCGCCAGGGATCCTAGTCACCGCGTTTAAAATGAACCTGCCGGCTG540.1137488677774735No Hit
CCTATAGGGCGATCTCTGCTAGGGATGACCCACCAAACTCATGCAT540.1137488677774735No Hit
TCTTGGGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC540.1137488677774735No Hit
ATACCGGGTACAGAGCAAAGGTGGAGAACGAGGTTGATCGCAGCAT540.1137488677774735No Hit
CACTCCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA530.11164240726307587No Hit
GGTAACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA530.11164240726307587No Hit
CACGCAGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC530.11164240726307587No Hit
CGCACCGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC530.11164240726307587No Hit
ACTCCTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC530.11164240726307587No Hit
GTAATAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC530.11164240726307587No Hit
TATCATGGGGGGCCAGCAGCCTTCATGAAAGGAGCAGGCTGCCGTG530.11164240726307587No Hit
GCAAATGGGACAGCGCCCTCGCCACCGCGTCTCTGCTGCTTTTGTG530.11164240726307587No Hit
GCGCCAGGGGACCCTCAGAAGCAGCTGGAGCGCCCGCATCTCTGGT530.11164240726307587No Hit
GACCTGGGGAGCGTCTGTTCTGCACCAACTCAGAGTCTTGTTGGAG530.11164240726307587No Hit
AGGCATGGGGGTGGGGGCCGGACGAGCTAGGGGTCGGCGGCGTGGC520.10953594674867818No Hit
CGCTATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA520.10953594674867818No Hit
ATGGCAGGGAGTCATTGGTTTGCTTTCAGAGCAGGGGCTTCTGAGT520.10953594674867818No Hit
TCGCCTGGGAAGCAATTTTGATCCTTTGAGTGGGGCCTTCCTCGCC520.10953594674867818No Hit
GTTAAGGGAACGTCAGAAGTGGTCAGATTACCCTATCCTCTCCAAA510.10742948623428054No Hit
GAACTAGGGGGGAATGTTTCTTCTACAGTTAGGAGCATAATGCTGT510.10742948623428054No Hit
GCTCAAGGGGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGT510.10742948623428054No Hit
AATATTGGGAATTCCTGGAGGAATAGGTACCAAGAAAAAAACGAAC510.10742948623428054No Hit
TTAACAGGGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGG510.10742948623428054No Hit
TGAACAGGGGGGAATTCCCCGGGCCAATTGCCTCTATAACTAGAGC510.10742948623428054No Hit
GTATTAGGGGAGACGTAATTCGTGAAGGAACCTACCAAGGCCACCA510.10742948623428054No Hit
TGCTTTGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT510.10742948623428054No Hit
GTCAGCGGGATGGCACAAAGCTTGTTCCGTTAGCTGGCATAAGATT510.10742948623428054No Hit
TTTTGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.10532302571988289No Hit
ACAAATGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCTT500.10532302571988289No Hit
ACTGGTGGAAAATGATGTCAGAAACTTTGAATTTTTAAGAAAGGCT500.10532302571988289No Hit
AGTCCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC500.10532302571988289No Hit
TTCACCGGGAGGTGTAAGAGCCAGCGCTGTGCCCCAAGCCGGACGG500.10532302571988289No Hit
TAGTGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGTTTT500.10532302571988289No Hit
CTGCCGGGAGCACACTGGGCGCTGGAGGGAGGACAGACTGCGGGCG500.10532302571988289No Hit
TAACACGGGGTAATATGATTTCACTATAATTCAATTACACTATTAA500.10532302571988289No Hit
TGTGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAAT500.10532302571988289No Hit
TCAACAGGGATCACTACCAGTGCTAGCCGCAGGCATTACTATACTA500.10532302571988289No Hit
ACTTACGGGTGTCCTCTCTCTGGGCATATATTTGTCAAGAGAGATG490.10321656520548522No Hit
TATCGAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA490.10321656520548522No Hit
TCACCAGGGACACGGGACTGTGATCAAAATTAAGAGAGAAAGAGGT490.10321656520548522No Hit
TAGCGCGGGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGT490.10321656520548522No Hit
GTTTGCGGGGGGCTGGTTGGAGCCGCTTGGAAACCTGGCACTGTCA490.10321656520548522No Hit
AATTGTGGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCT490.10321656520548522No Hit
CGCAGCGGGGGGATACAGCAGGGCAGGAGCGGTTCAGAGCGGTTAC490.10321656520548522No Hit
CGAGCCGGGAGACAGACGTGCGCGCGTGCATGCTGTCGCTGCCGGG490.10321656520548522No Hit
CGACAAGGGAGGTGATCCGAGGGGCTTCGGAGGGTGTTTGAGCAGT490.10321656520548522No Hit
CTTAATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA490.10321656520548522No Hit
CGACTTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG480.10111010469108757No Hit
TCATAAGGGGACAATAGGAATTGAACCTACACTTAAGAATTCAAAA480.10111010469108757No Hit
GTACGTGGGGAGCAGGTGAGGGGTCGGGGTTTGCCCGATGATCATG480.10111010469108757No Hit
ATTACTGGGGTATAAGAGTGTAAGTTAAAGTTGGAGTTAAATAAGC480.10111010469108757No Hit
GCTATAGGGAGGGGAAGCTGGAAACGAACCCCACTACCTGGGGTCA480.10111010469108757No Hit
TGCTGCGGGGGGGCGACCTCTTCCTGCGTTCTCACGGCTCTTTCTG480.10111010469108757No Hit
ATTCATGGGGGTATCCCCGAAGGGGCTAAGATCGCCCAAAATGTCA480.10111010469108757No Hit
TGACATGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAA480.10111010469108757No Hit
TATCATGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT480.10111010469108757No Hit
AGCTGCGGGGTGCTTTGTGTGTTCTTTACAACCCCCTGAAAACGGC480.10111010469108757No Hit
AGCACCGGGGGGAATAATCAGTGAGGTTGGCTTTTTTCCCTACTGT480.10111010469108757No Hit
CTTCCGGGGACGGCCGGGCTGCTTGGGTGTCTGCTGGGCTGTGGTC480.10111010469108757No Hit
TTTACGGGATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCTC480.10111010469108757No Hit
CTTTCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC480.10111010469108757No Hit
TGCAACGGGCAGGAGGGCCAGGAGGAGTTCTACGTTCTGGGTGAGG480.10111010469108757No Hit
TCTTAAGGGCTGGCCGCCGGGCGCGCGCCTGGCTGAAGAACCTTTT480.10111010469108757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)