FastQCFastQC Report
Sat 31 Dec 2022
SRR5843544.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843544.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56499
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTGGGGGCTGCTACAGGCAGGCAGGGAGACCTTCAGAGCTCATC880.1557549691144976No Hit
GAATGTGGGACTGCCACAGTGGTTCCGGAAGCCTGGTTGGCATTGA630.11150639834333351No Hit
TTTACCGGGATCCCAACCAGTATCTACGACCATAAGAGGGGAGTTC620.10973645551248694No Hit
AACCCGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT610.10796651268164038No Hit
TTCAACAGGGAGGGGAAATGACTAATGGAATAAACACAGAAATCGG600.10619656985079381No Hit
CACGTGGGGACCATGTCTTGTACTTAAACACATATGAACACTCACG580.1026566841891007No Hit
ACTTAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC580.1026566841891007No Hit
GTCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC580.1026566841891007No Hit
GCTGACGGGGAGGGAAAGATAGAGTGTGAGTCAGCAGAGACCACTG570.10088674135825414No Hit
TTATCAGGGAGAAAACCTTCAGTTGATTCTGTTACTCTAATTCTAC570.10088674135825414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)