FastQCFastQC Report
Sat 31 Dec 2022
SRR5843543.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843543.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54081
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTGGGGGCTGCTACAGGCAGGCAGGGAGACCTTCAGAGCTCATC940.17381335404300957No Hit
CTTTCAGGGGAATCTTGACTTTAGTTTTCTTGGTTTCTTAGGCTTG670.12388824171150681No Hit
CGAGATGGGATTGTAAGAACAAGCCATACCCAAAGTCTCGTTTCTG660.12203916347700672No Hit
TATTATGGGATACCATCAAAGCGTTCATCCCGGCCATCGACTCATT660.12203916347700672No Hit
GAATGTGGGACTGCCACAGTGGTTCCGGAAGCCTGGTTGGCATTGA600.11094469407000611No Hit
TTACAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC590.109095615835506No Hit
CACGTGGGGACCATGTCTTGTACTTAAACACATATGAACACTCACG590.109095615835506No Hit
AACCCGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT590.109095615835506No Hit
CTTTAAGGGGTCCCCAGTCACCTCACCACTTTTAAACCTTGAAATG580.10724653760100589No Hit
TTAATGGGGGTCTGTGAGTGGGACTGGCTGCCCCTACTCATTGAGA560.10354838113200569No Hit
GTCACCGGGAGTAGCAGTTGAGGCAATTAGTTTTAGGGTGAATTTT560.10354838113200569No Hit
TGAAAAGGGAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTC560.10354838113200569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)