FastQCFastQC Report
Sat 31 Dec 2022
SRR5843539.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843539.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70618
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAGGGTCCGGCAAGATGGCGGTGGCGCTGACCTTCCGCCGAC990.14019088617632897No Hit
GCCCATTGGTACACACTAACCTCGGTGGAAAAATAACCATTCCCTG970.13735874706165566No Hit
GTCAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA960.13594267750431901No Hit
CCTTGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC940.13311053838964568No Hit
CTGCATGGGAGATAGGATTGTGGGCCATCGGAAGGAGCTCTTTCTC940.13311053838964568No Hit
CTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC940.13311053838964568No Hit
ATAGTTGGGGTCTTAATTGCCTCTCCCCCCAGTTTGCCAGTCCCGC910.12886232971763573No Hit
GCACTTGGGGGGCACCACCCACAATGGGCCCTCCCCCTCTTGATCA910.12886232971763573No Hit
TGCGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA890.12603019060296242No Hit
AATTTAGGGGTGGCCAGTAAGTGGTGTGGAGATTACGAAGGGACAT890.12603019060296242No Hit
GAACTGGGGATTGGAGCAGTGAAGAACCCGAGGAAGAGCAGGAGGA890.12603019060296242No Hit
TCTATTGGGGAGCCTGAAAGGAGAGAAAACGGTGTATTGAGGCGCA880.12461412104562575No Hit
CCAAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA870.1231980514882891No Hit
GCAGCAGGGCGATCTGTCTGCGGGGGGAATTCTGGACATTAATTAG870.1231980514882891No Hit
CACTCAAAGCCTCCTGTGTATGGTGCCTGCAGACTCTTAGACATGG870.1231980514882891No Hit
GTCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC870.1231980514882891No Hit
GACGGGGAAGTATCGTGCGTGCCCTTGTGAGTTTGGAGGGTGCCGG870.1231980514882891No Hit
CACACGGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC860.12178198193095245No Hit
TGGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC860.12178198193095245No Hit
TGACCTGGGGGCCCCAGAGCGGAAGAGGGAAGTGAGTCGGACCGGG860.12178198193095245No Hit
TCAGCAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG850.1203659123736158No Hit
CCAATTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT850.1203659123736158No Hit
GTTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA850.1203659123736158No Hit
TCCCCCGGCCCAGTGCACACCCAGGAGATTGAGGAAAACTTGCTTA850.1203659123736158No Hit
GATTGTGGGGGAGCCTCTCCTCTGGCCGCCGCGCGGGAGAGAGGCC840.11894984281627914No Hit
TGCATCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA840.11894984281627914No Hit
CAATCCGGGACATCAAGAAGTTTGCATCAGGTGGCTGTGACAACCT830.11753377325894247No Hit
GCTGATGGGTCCATCTGAGCCAGGGCTCTCTCCTGAGATGTCTGTG830.11753377325894247No Hit
ATGACTGGGAGCTTTCTTAAGAAAGTGAAATGTTTTGTGGTTTTGC830.11753377325894247No Hit
TTTAGCGGGCGATCTGCTCATGGGGAACAGCCAAATGGATTGACTA830.11753377325894247No Hit
CTCTTAGGGATGGCCCAAAAACTATAGTATAAGTTTGAAATTTCGG830.11753377325894247No Hit
GCTAGCGGGGCGTGGGGTCAAGGGTCACCGGCAAGATGGCGGCGGC820.11611770370160582No Hit
CACTCTGGGGGAAGGAGGAAGTGTTTTGCTGCGGGGTCCTGGCCTG820.11611770370160582No Hit
CCATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA820.11611770370160582No Hit
TCAAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA820.11611770370160582No Hit
TGCGGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA820.11611770370160582No Hit
GGCACTGGGGGTTTCTTTTAGTGACAAACTGGTTATTCAGAGCCTG810.11470163414426916No Hit
ATGCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA810.11470163414426916No Hit
ACTAGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA810.11470163414426916No Hit
CGCGGGGGATCTAACACCGGGGGGAATTCTGGACATTAATTAGGGC800.11328556458693251No Hit
CAAACGGGGAGTGTGCAGATCCCTTTATGTTGCCTCATGTAAGCGG800.11328556458693251No Hit
TAGTATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT800.11328556458693251No Hit
GCGTTTGGGGACAGCACTCATGGAGAGACTACCTCTGCTGAAGACT800.11328556458693251No Hit
TCTCTGAGGGCATGGGCTACAGAATGAGTTCAAATGTTAGCCTGGG800.11328556458693251No Hit
GCGCATGGGGGGGATCTGCATATGTTTGCAGCATACTTTAGGTGGG790.11186949502959587No Hit
ACTACCGGGGCCTTGCGGCATCCCAGGATGGTGGCGCCCAGCGGTG790.11186949502959587No Hit
CTTTGTCAGGGGAGGGCCAAGCCCAGGTTGCTTCTATTTGCTTCAC780.11045342547225918No Hit
CACGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC780.11045342547225918No Hit
ACGTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA780.11045342547225918No Hit
TGGGCTTGCTGCTGGGACTGGTCAGGCTGATCCTGGACTTTGTCTA780.11045342547225918No Hit
GCTGCAGGGACATCGAGACTGTGGCCATGGAGGGAAACAGTGGCTT780.11045342547225918No Hit
AGTAACGGGAGGCAGGGCGGAGGCGCAGTCTGCACCATGGCGTATC770.10903735591492253No Hit
CACCTGGGGGAGTTCCATGATGGCGTCGGCGGTGCTGTCAGCGTCT770.10903735591492253No Hit
CTCTCTGGGGGCTGGGATAAGCGCTACTGCCTGGACAGCCTGGATG770.10903735591492253No Hit
ATCTGCGGGGGGGCGTATGGTCGGTGTGCGCGACCGTGGCCCGGTT770.10903735591492253No Hit
TCCAAGGGGAGCGTCCTTCGGAGCGGAAGGAATATGGCGTCCGCTA760.10762128635758589No Hit
GACCGAGGGGGAAGTCACCTGTGGGCCAGTCATGTGTTGACCCTTT760.10762128635758589No Hit
GCTCACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC760.10762128635758589No Hit
AATCTTGGGCCTGTTCTCACATCCCCAAGCTTAGATAGGTGTGGAA760.10762128635758589No Hit
TCTTATGGGCTCTCTTCCTGTTCTCCACCATGGCGCAAGATCAAGG760.10762128635758589No Hit
AAGCAAGGGTACGGGGACCAGTTGGCTTCACGGTTCCCCCAGCTCA760.10762128635758589No Hit
GGCATGGGGGAGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGT750.10620521680024923No Hit
TGGCCGCGGGGTCCTGTTAATTCAGAATTCAGAACGGCACCTTTCT750.10620521680024923No Hit
TATTACGGGGCCTTTCCGCTCGGCCGTTCTCCTGTATAGGAGGCAG750.10620521680024923No Hit
AAAATGGGGGGGCCTGTTGCGGGGCTCAGATGATGAGCGGCGGCGG750.10620521680024923No Hit
CATTGCGGGACCGGCAAGATGGCGGTGGCGCTGACCTTCCGCCGAC750.10620521680024923No Hit
ATGCAAGGGGCCTTTTTACTACCTTCTCTCTCAATACACAACACCT750.10620521680024923No Hit
TTTGCAGGGGGACGCGTCCCGGGTCGCGCCGGCCCAAGATGGCGTG750.10620521680024923No Hit
CAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT750.10620521680024923No Hit
CAACAAGGGGCCCAGCGCGAGCGAGCCTTCCGGCTGTAACCGCTGG750.10620521680024923No Hit
TCGACCGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCCA750.10620521680024923No Hit
TCTTGCGGGGCTTTCGGAGCTGTGCGGCATTCTGAGCAGGAATGGC740.10478914724291258No Hit
GTACTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG740.10478914724291258No Hit
CAGCTTGGACCTGTCGCTGACCAAAGGATTACCCAATTGGATCTCC740.10478914724291258No Hit
AACTTTGGGGCTCTGCGGCCATCATGGGATCGTGCTCTTCTCGCTC740.10478914724291258No Hit
CAGCTAGGGGTGGCTACAAGCTGGCGGTGATGTGTGTGTGCATGCC740.10478914724291258No Hit
ACTGCTGGGGCCGCTGGCAGCAGCCAGTCTAGCGGATGGCCCAATG730.10337307768557592No Hit
TATATCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.10337307768557592No Hit
CGAGACGGGAGGAGTTGACCAGCCAACCGACTCTGCATTCATCTAG730.10337307768557592No Hit
GATATTGGGGGGCACTGCATAGTCCTTTTCATCACCTATAACATCC730.10337307768557592No Hit
GTTAGAGGGGGGAACTGAGCGAGCCGGTGTTGGAGTTCCAGGCGCG730.10337307768557592No Hit
GGTTAAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA730.10337307768557592No Hit
TCTGTAGGGGGGAGGAGGCTTAGGGACGTTTCCTCGGGAGCCATCC730.10337307768557592No Hit
ACTGCCGGGCTGACCTCCAACAGGAATTTCACCACTTAACCCTCTA730.10337307768557592No Hit
ACCATGGGGGCTCCCAAGCGCGGCGGCGGCAGCGTAGTTCCTAGCC730.10337307768557592No Hit
CAATTAGGGGGTACACAGTGTGTGCTTGGATGGGAGGAAAAGCTCC730.10337307768557592No Hit
TTCATAGGGGGCCTGCTTAAGAGTAGGAACCCTCTATAGACCCAAC730.10337307768557592No Hit
CTCAGCGTGGGGGAAGTGCTCACGCGCGGAGCCCACTGGGCGAACA730.10337307768557592No Hit
GAACGTGGGAATTCAATTACACTATTAACCCTTGGCCTACTCACCA730.10337307768557592No Hit
GTGTGTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC720.10195700812823925No Hit
GTACCTGGGAGATCTAGCTAGTGAAGAAAAGAAACGGCTTGAGGAA720.10195700812823925No Hit
CAAGAGGGGAGTACAAGCTGTCATGGCGGCCCGACTGTTAAGCTTG720.10195700812823925No Hit
GGTACTGGGCAACCCAAGAACACATATGATTACTTCTGCCAGCCTG720.10195700812823925No Hit
TGCAAGGGGGAAGCGGCCAGAGGTCACCTGCCAAGATGGTTCGCTA720.10195700812823925No Hit
CGTCAAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG720.10195700812823925No Hit
ACTTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA720.10195700812823925No Hit
CACCAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA720.10195700812823925No Hit
CGTTCCGGGCACTTCGCCGAGGCGGGGAACGGGATGAAGCGGCTCA720.10195700812823925No Hit
CTATGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC710.1005409385709026No Hit
CGCCAAGGGAGAAAAAGGCCACGATGCGACCCCAGTTTACTCCATC710.1005409385709026No Hit
CTGACAGAGGGAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGC710.1005409385709026No Hit
TCGCCCTGGTGATAGTTTCTCCACATTTGATACGCCTTACTGCAAA710.1005409385709026No Hit
GCATTCGGGGTAGACAAAGCCACCTTGACCCGATTCTTCGCTTTCC710.1005409385709026No Hit
TCTACAGGGTGAAGGAGTTGACCAGCCAACCGACTCTGCATTCATC710.1005409385709026No Hit
TGTGGTGGGAGGAGGGACCAGGGCCGACAGGAACACCAGAGGTTCT710.1005409385709026No Hit
CTCACCGGGGACTTGGAGGATTCTGGGTGGAAACTTCAGTCATCTG710.1005409385709026No Hit
GGATACGGGACAACCCAAGAACACATATGATTACTTCTGCCAGCCT710.1005409385709026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)