FastQCFastQC Report
Sat 31 Dec 2022
SRR5843534.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843534.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77244
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGTGGGTGGAACAGTTACAAAAAGTCCATTTCATTACAGATAC1150.1488788773238051No Hit
CAATCAGGGAGAACTGGGGCTGGCACACAGAGGCAGTGCTGGGCCT1130.14628967945730412No Hit
TGCAACGGGGGAGAAGGCCTGGCGGAAGCAGTCACGAAAGAAGGTC1070.13852208585780124No Hit
TACTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC1060.13722748692455078No Hit
GCGCGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1040.1346382890580498No Hit
TGTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1020.13204909119154887No Hit
CGCCATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA1010.13075449225829838No Hit
CTAACGGGGGATTTGGACCACTTTCATTTACATGAAGAAATATCTT1000.1294598933250479No Hit
GCCATGGGGAGTTTTGCTCCTTGGATTCTGAGCCCGGGCATCGCCC990.1281652943917974No Hit
GTCACCGGGCAGACGCTTTAGGGTGGGCCGAGCAAGCCCAGCTAGG980.12687069545854693No Hit
GCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCA980.12687069545854693No Hit
TAGTCTGGGGTGGACAGAACGAACTTTCAGGGTCTTCAATGGTCAG970.12557609652529647No Hit
CTTTTGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA970.12557609652529647No Hit
AAGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT970.12557609652529647No Hit
CAATGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA960.12428149759204597No Hit
CACATAGGGGGGTGTTTTTTGGTTTGTTTGTTTTTGTTTATTTTCA960.12428149759204597No Hit
TGAGTAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA950.1229868986587955No Hit
CTTGCTGGGGAGCTGGACACGATCTGTCCCAAAGCACCCAAGTTAG950.1229868986587955No Hit
GTGTGCGGGACTGGGACAAAATGGTAGTTTGAGCCTCCAGACACAC950.1229868986587955No Hit
CAAGTGGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTTT950.1229868986587955No Hit
CTGATAGGGATCCTCAGAACTTCCCATCTTCTGCCCCCATCCTTAG940.12169229972554503No Hit
TCCACAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA940.12169229972554503No Hit
GGCTGAGGGTCCGATCTTGCACTAGGAAACACAGAGTGTGTATCAT940.12169229972554503No Hit
TCGAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA930.12039770079229455No Hit
TGCTTCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT920.11910310185904407No Hit
AACAGGGGGGAAGGTGAAGATGACCGCACTGTGTGCAAGGAGATCC920.11910310185904407No Hit
GACATAGGGAAGCTTTTATCATTTAACCAGCTGAACACCACACCAA920.11910310185904407No Hit
AACCCAGGGGCCTTTTGCGGCCATCGGTGGATCGCAGCCGCCAAAA920.11910310185904407No Hit
CTTTCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA910.11780850292579359No Hit
TAATCCGGGGTGAACTTTAAAAATTTTTTACTTCTCATAAACTGAG910.11780850292579359No Hit
TGCATAGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGCC910.11780850292579359No Hit
TTCAGGGGACAGCAAAAACGACCCACCAATGGAAGCAGCTGGCTTC910.11780850292579359No Hit
TTCGAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA910.11780850292579359No Hit
GCCAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA910.11780850292579359No Hit
GACACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC900.11651390399254312No Hit
TGCCGCGGGATGTGTTTGAGGAGTCCCAGGTGGCTGGTACCCCCAT900.11651390399254312No Hit
CACACTGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC900.11651390399254312No Hit
ACTGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA900.11651390399254312No Hit
ATAGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA900.11651390399254312No Hit
AACAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA890.11521930505929262No Hit
CAGTTTGGGACTTCTTCCTCTTTCTTGACTCCATCTTCGCGGTAGC890.11521930505929262No Hit
CTAAAGGGGCGATCTTATTACGGGACAGGGCTGGCACATCAAGCTG880.11392470612604216No Hit
GCAGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA880.11392470612604216No Hit
AAGTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA880.11392470612604216No Hit
AAACAAGGGGGCTTTGTGGGAATCTGGCCAGCGGGCTTCTAATGGG870.11263010719279166No Hit
TACCCGGGACAAAATGTGCTCCATGGTCAAGAAGTGGCAGACCATG870.11263010719279166No Hit
GCCCCTGGCTCAAATATTTGGTCGCCCTCGGCTGCGCTACGCGGTG870.11263010719279166No Hit
CTCGGGTGGAGTCTTCTGACTGCTGGTGGAGCAGGTCTCAGGAATC870.11263010719279166No Hit
GTTGCCGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC860.1113355082595412No Hit
TTTCAGGGGAGATGCGGTGTTGTGGGGTCACTGACTACACAGACTG860.1113355082595412No Hit
GCGGACCGGGTTCTTTTCACAAGAGAATTAGCCCGTCGCTTAGAAG860.1113355082595412No Hit
TGATTGGGGGGACAGTGGAGTGATGTGCCCTGCAACTACCATCTAT860.1113355082595412No Hit
CAACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA860.1113355082595412No Hit
TCCACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA860.1113355082595412No Hit
GCTCATGGGGCAGTGTCCAGTCATGGCCTCGATCCATCGCGTATAG860.1113355082595412No Hit
TAAAATGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA850.11004090932629071No Hit
TGTGCGGGGACAAGAAAACTCATCATAAACATTGCTGACAGAATAA850.11004090932629071No Hit
CACAGTGGGGTGGCCACATTTGCAGCGTGCCCTTCTGTCGAGAATC850.11004090932629071No Hit
CGCATTGGGGCTCTGAGCTGGAGAGTGCCATGGAGACCCTCATCAA850.11004090932629071No Hit
TTTTCTGGGGGGAGGAGGGACCCACCACAGCCCTTACCTTCCTGTA850.11004090932629071No Hit
CTTGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA850.11004090932629071No Hit
TGCGCTGGGGAGGCTCGAGAGCTGCCAAGTGGGGGGAAGCATGGCC850.11004090932629071No Hit
CATCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA840.10874631039304024No Hit
AATGCCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT840.10874631039304024No Hit
TGCGCCGGGAGGCGAAGAGAACACAGACTATGTGAACGCATCCTTC840.10874631039304024No Hit
CTAGCTGGGACCGACGGGGAAACCACCACTCAAGGGCTGGATGGGC830.10745171145978977No Hit
TCAATAGGGATTAGTGACTGTGGGATGACCGGGTCTCACTGCTGTT830.10745171145978977No Hit
TTGCGCGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT830.10745171145978977No Hit
GATGGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA830.10745171145978977No Hit
ACTACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA830.10745171145978977No Hit
TACCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC830.10745171145978977No Hit
CACATTGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGA830.10745171145978977No Hit
CATAGTGGGACCACGACTTCAACGTCCTGAGTACCTTCTCCTCACT830.10745171145978977No Hit
CTACTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA830.10745171145978977No Hit
CCTCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA830.10745171145978977No Hit
AAACTGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA830.10745171145978977No Hit
TATTGTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG820.10615711252653928No Hit
AGTCTAGGGGCCCCACTGCTTCGACCTCTGCCGCCGCCACTGCCGC820.10615711252653928No Hit
GCTACAGGGGTTGTCTGCCTGAGTCCTCATGCTGCATATTCCTGCT820.10615711252653928No Hit
GTTTCTGGGAGATGAAGACCGGATCCCCAACTCACTTCTCAAGTCC820.10615711252653928No Hit
ACAACAGGGGAAGTTGAGTCTATACCACTCACCGAGACTGTTTCCA820.10615711252653928No Hit
GCGAACGGGGGAGGCAGGAAGGGCCAGGGGATTTCAGAGTTGCCCT810.10486251359328881No Hit
GTACACGGGAACAAGGAAAGGTGAACCAGCTAACTCCCAAGATACG810.10486251359328881No Hit
CTCTGCGGGACTACTACTGAGCTAGAGCCTCAACACATCTAATCTT810.10486251359328881No Hit
TCGCCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA810.10486251359328881No Hit
CAAGTCAGGCATGAAGGAGCTGGCTGTGTTCCGGGAGAAGGTCAAT810.10486251359328881No Hit
TTCACACGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA810.10486251359328881No Hit
TTTTCGCGGGGGGGTTTCTACGGGGAAGAGACATCTCTAGGCTGGC810.10486251359328881No Hit
TAGACAGGGTAGCTGCTTGGCCCAAACCAGAATCCTCCTCTCCCTC810.10486251359328881No Hit
TAACTGGGAGGACTGGGGAAGCGGCTAGCCAGGCTGCAGAAGGCAA800.10356791466003831No Hit
GAATTAGGGGGTTGTCCGCAGGGGCAATGAAGACATTGTGATTACC800.10356791466003831No Hit
GCGACAGGGGACCAGGTCCAGGAAGAGCTGCAGAGCTCCCAAGTCA800.10356791466003831No Hit
CAACGAGGGGGGCGGACGCTGAGAAGGACGATGAACATTGTCCCCA800.10356791466003831No Hit
GCTCTAGGGCAGGGACCCAGACCTCACCCTTGTGCCCAAGTCACTT800.10356791466003831No Hit
ACTTGAGGGAGGGCAGCGTCTGAGGAAGTTTGCTGCGGTTTCGCCT800.10356791466003831No Hit
TAAGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA790.10227331572678784No Hit
ACTTCGGGAAGGGATTTAACTACTTTTAGAAGTAGTTCTCTGGGGC790.10227331572678784No Hit
TGTTAAGGGGGAAATGGCCCTCTGCACGCAGCTCTGGGATGCGGCA790.10227331572678784No Hit
ATTCCGGGTGCTGTAAAGAGGGGCGTTGAGTCCGTCCGACTTCACT790.10227331572678784No Hit
AAGTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA790.10227331572678784No Hit
TCTCCAGGGGAACCGCATCTGGGCCAGGGAAGGAGCCGCAGCACTT790.10227331572678784No Hit
TATCCTGGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCC790.10227331572678784No Hit
ACGCCGGGGAGGTCAGTTATCTTGAGCCTAACACGTCGATTATATC790.10227331572678784No Hit
AACCTGGGGAGATTCCTACTTAAACAAAAACTTTCCATGACAGTAG780.10097871679353736No Hit
ACACCTGCTCTGTTCACCCTGTGTGCTGGAAATGAACTCTTCTACT780.10097871679353736No Hit
AATCATGGGGAAGGTTGTTTTGCTTGTTGTATATTTGTGTATGTAG780.10097871679353736No Hit
GTCGTCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA780.10097871679353736No Hit
GCTCTTGGGCGCTGGGCAGGCAGTACTGCTGGTGGTTGCAGTGACC780.10097871679353736No Hit
CGAATTGGGGGGCCCGGAAAGGGTGGGCTTTGCGAAGATGGCGGCT780.10097871679353736No Hit
TACAATGGGAGGCGCGAAGCGGTCTTCAGGTTTGGTCTCAGTTGCG780.10097871679353736No Hit
TCGAAAGGGGGGGTTGCGGTAGAACATGGCGCAGGGACAACGCAAG780.10097871679353736No Hit
TAGCACGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT780.10097871679353736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)