FastQCFastQC Report
Sat 31 Dec 2022
SRR5843533.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843533.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73353
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCATAGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGCC1090.14859651275339797No Hit
TGCGCCGGGAGGCGAAGAGAACACAGACTATGTGAACGCATCCTTC1090.14859651275339797No Hit
GTTGCCGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC1040.1417801589573705No Hit
AACAGGGGGGAAGGTGAAGATGACCGCACTGTGTGCAAGGAGATCC1030.14041688819816503No Hit
TACTAAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG980.13360053440213762No Hit
CGACGCGGGGCGCCCCCACTTCTTCCTCTTTCTTGACTCCATCTTC960.13087399288372664No Hit
TCGAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA960.13087399288372664No Hit
CTTGCTGGGGAGCTGGACACGATCTGTCCCAAAGCACCCAAGTTAG960.13087399288372664No Hit
GCCAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA960.13087399288372664No Hit
CTTGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA930.1267841806061102No Hit
GGCTGAGGGTCCGATCTTGCACTAGGAAACACAGAGTGTGTATCAT930.1267841806061102No Hit
TTTTCTGGGGGGAGGAGGGACCCACCACAGCCCTTACCTTCCTGTA920.1254209098469047No Hit
TATCAAGGGAGTTCCATGATGGCGTCGGCGGTGCTGTCAGCGTCTC920.1254209098469047No Hit
CGCATTGGGGCTCTGAGCTGGAGAGTGCCATGGAGACCCTCATCAA910.12405763908769919No Hit
TGACACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA910.12405763908769919No Hit
CTACTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA900.12269436832849372No Hit
TAATCCGGGGTGAACTTTAAAAATTTTTTACTTCTCATAAACTGAG890.12133109756928824No Hit
ATAGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA890.12133109756928824No Hit
AAGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT890.12133109756928824No Hit
TAGACTGGGGAGAAGCCGGAAGTTCAAGGCTGGCTCTCGCTTTAGT880.11996782681008276No Hit
GTCGCAGGGAAGATGGTCAAGCTGGCTGCACTGCAGCCCTCTTTGG880.11996782681008276No Hit
TGCAACGGGGGAGAAGGCCTGGCGGAAGCAGTCACGAAAGAAGGTC880.11996782681008276No Hit
GGCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC880.11996782681008276No Hit
AAACAAGGGGGCTTTGTGGGAATCTGGCCAGCGGGCTTCTAATGGG870.11860455605087726No Hit
GCAGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA870.11860455605087726No Hit
TTCGAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA870.11860455605087726No Hit
CTCTCCGTGGGCGCTATGACTTCACCTCGTGCATGGGCGTGCTCCT870.11860455605087726No Hit
CGTATAGGGGGGGAAAAGAAACAGGATTATCCTGAGTTAGACAAAA860.11724128529167178No Hit
CGTCATGGTGTCCCACCGATCTGGGGAAACTGAGGACACTTTCATC860.11724128529167178No Hit
CTAACGGGGGATTTGGACCACTTTCATTTACATGAAGAAATATCTT860.11724128529167178No Hit
GTGTAGGGCTGACGATAATGAGTTCACTCCTTGGATAAGGATGTTA860.11724128529167178No Hit
TGCCGCGGGATGTGTTTGAGGAGTCCCAGGTGGCTGGTACCCCCAT850.1158780145324663No Hit
CATCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA850.1158780145324663No Hit
TAAGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA840.11451474377326079No Hit
TATTAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT840.11451474377326079No Hit
CACAGTGGGGTGGCCACATTTGCAGCGTGCCCTTCTGTCGAGAATC840.11451474377326079No Hit
CACACTGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC840.11451474377326079No Hit
TTGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA840.11451474377326079No Hit
TGTCCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA840.11451474377326079No Hit
TAAAATGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA830.11315147301405531No Hit
CGCCATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA830.11315147301405531No Hit
TGTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA830.11315147301405531No Hit
GCTTCCGGGACCACGACTTCAACGTCCTGAGTACCTTCTCCTCACT830.11315147301405531No Hit
TGCTTCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT820.11178820225484984No Hit
CTCTGCGGGACTACTACTGAGCTAGAGCCTCAACACATCTAATCTT820.11178820225484984No Hit
ATCCAAAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA820.11178820225484984No Hit
GCGGACCGGGTTCTTTTCACAAGAGAATTAGCCCGTCGCTTAGAAG820.11178820225484984No Hit
TGCACAGGGGTGTGGAATACATTTGTTGAGTGGGAAGATCCCTTCT810.11042493149564436No Hit
CTGCGTGGGTGGAACAGTTACAAAAAGTCCATTTCATTACAGATAC810.11042493149564436No Hit
AAGTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA810.11042493149564436No Hit
TGAGTAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA810.11042493149564436No Hit
AAGTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA810.11042493149564436No Hit
GTGTGCGGGACTGGGACAAAATGGTAGTTTGAGCCTCCAGACACAC810.11042493149564436No Hit
CTTCAGCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCC800.10906166073643886No Hit
CTGATAGGGATCCTCAGAACTTCCCATCTTCTGCCCCCATCCTTAG800.10906166073643886No Hit
CAAGTCAGGCATGAAGGAGCTGGCTGTGTTCCGGGAGAAGGTCAAT800.10906166073643886No Hit
TACAATGGGAGTGGAGGCAAGGACAGCTGACGAGTGCCTGTTTCAG800.10906166073643886No Hit
AGTCTAGGGGCCCCACTGCTTCGACCTCTGCCGCCGCCACTGCCGC800.10906166073643886No Hit
TTTTCGCGGGGGGGTTTCTACGGGGAAGAGACATCTCTAGGCTGGC800.10906166073643886No Hit
ACGTCCGGGAACGCAGAAACCAAAGCCAGAGGATCCATGTATGGTT800.10906166073643886No Hit
GCTCTAGGGCAGGGACCCAGACCTCACCCTTGTGCCCAAGTCACTT800.10906166073643886No Hit
AACCCAGGGGCCTTTTGCGGCCATCGGTGGATCGCAGCCGCCAAAA790.10769838997723338No Hit
CTTTTGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA790.10769838997723338No Hit
ACCTCCCACCCCCATCCCCATCCCAGCATCCGAGGACCCAAGGGCT790.10769838997723338No Hit
CAGTTTGGGACTTCTTCCTCTTTCTTGACTCCATCTTCGCGGTAGC780.1063351192180279No Hit
GTCACCGGGCAGACGCTTTAGGGTGGGCCGAGCAAGCCCAGCTAGG780.1063351192180279No Hit
TCTTATGGGGCAGGCGTAGAGGTCCCGCGTCCTTAGCGGGCCCAGC780.1063351192180279No Hit
CAACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA780.1063351192180279No Hit
TAACTGGGAGGACTGGGGAAGCGGCTAGCCAGGCTGCAGAAGGCAA770.1049718484588224No Hit
TTGCTAGGGGCATTGACCTGAACACTGAGCAGTAGGACTTCATGCC770.1049718484588224No Hit
GATGGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA770.1049718484588224No Hit
TTAAACGGGTACAAGTGTGATCCTGCAGGTTACTACTGTGGCTTTA770.1049718484588224No Hit
CGCGCTGGGGCTGTGTACAAGGCAGGGGCACGCGAGGGCGCCGAGC770.1049718484588224No Hit
CTCATAGGGGGGGAAAGACGACTAAAAGACAGGTCTCCTCACACCG770.1049718484588224No Hit
GAGCTTGGGCTAGGCTTTATTGTATGAGCCCACCACATATTCACAG770.1049718484588224No Hit
ATTCCGGGTGCTGTAAAGAGGGGCGTTGAGTCCGTCCGACTTCACT770.1049718484588224No Hit
TGATTGGGGGGACAGTGGAGTGATGTGCCCTGCAACTACCATCTAT770.1049718484588224No Hit
CCACCTGGTGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATC770.1049718484588224No Hit
GACACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC760.10360857769961691No Hit
GCGCGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA760.10360857769961691No Hit
GCGAACGGGGGAGGCAGGAAGGGCCAGGGGATTTCAGAGTTGCCCT760.10360857769961691No Hit
AAAATGGGGGGCGCCCGTTCCGCTTGGGACCCTGGGACTCTGGGAC760.10360857769961691No Hit
TCATTAGGGGAACGGTGGCGGCGGCGGTGACTCTGGCAGCTCGGGA760.10360857769961691No Hit
GTCGTCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA760.10360857769961691No Hit
ACCCAGGGGTGACTTTCCTGTCTGGGGGTCAGAGTGAAGAGGAGGC760.10360857769961691No Hit
TATCCGGGGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACC760.10360857769961691No Hit
TCCACAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA760.10360857769961691No Hit
TAGCACGGGGGAGCAGATAAGAATCAATATAATCTAGAAACAGCCC760.10360857769961691No Hit
GCCATGGGGAGTTTTGCTCCTTGGATTCTGAGCCCGGGCATCGCCC760.10360857769961691No Hit
ACAAGAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA750.10224530694041144No Hit
TACCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC750.10224530694041144No Hit
TAGCGGGGAGCACCGAGCTTCTGTCGCCATCTCCGGGACTCCAAAC750.10224530694041144No Hit
CAACCTGGGGGGGCCCAAGATGGCCGCTCTCCGCTACCGGCGTTTC750.10224530694041144No Hit
CAATGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA750.10224530694041144No Hit
TACTATGGGACAGACCGCAACCTAAACACAACTTTCTTTGATCCCG750.10224530694041144No Hit
TTATAGGGGGCCAAAGAGCCACCGCAGAGGGACAGATACCGGCTAG750.10224530694041144No Hit
ACTTGAGGGAGGGCAGCGTCTGAGGAAGTTTGCTGCGGTTTCGCCT750.10224530694041144No Hit
CATGCAGGGCTCATCTTGCTGTTTAGAGATGGACTTGGCTCATCTT740.10088203618120596No Hit
TTATGGGGGGCCCTCAAAGGCTCCGCCTCTGCTGCTTGAATCCCAC740.10088203618120596No Hit
CTATTAGGGAGCTATGACACTGCTCACTGAACGGGGGAAGCTGCAC740.10088203618120596No Hit
GAATTAGGGGGTTGTCCGCAGGGGCAATGAAGACATTGTGATTACC740.10088203618120596No Hit
GTTTCTGGGATGGTGAGAAGGACACCTACAGTTACTTGGCTTAACC740.10088203618120596No Hit
TTTACCGGGCGGACAAAGAAGAGATTGCCTTCAAAGACCTGGATGT740.10088203618120596No Hit
ACGACTGGGGAGACGAATTGCCAGAATTATTAACTGCGCAGTTAGG740.10088203618120596No Hit
TCGAAAGGGGGGGTTGCGGTAGAACATGGCGCAGGGACAACGCAAG740.10088203618120596No Hit
TAGACAGGGTAGCTGCTTGGCCCAAACCAGAATCCTCCTCTCCCTC740.10088203618120596No Hit
GCCACAGGGGAGAGACCCGGAGTCCGAATTCAGAGGCCCCAGTCTG740.10088203618120596No Hit
GATTCAGGGGAGTCACGTGTGAGCCAAAGATGGAGCTCAGACGACC740.10088203618120596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)