FastQCFastQC Report
Sat 31 Dec 2022
SRR5843528.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843528.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43639
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTCCGGGGAAAAAACCGGAGGGGAAAGCTGCGGGAGGCGACAGC550.12603405210935173No Hit
TCGCTGGGGGGATTTATTTCCTATTTTATACCCTAATCGGTTCTAT500.11457641100850156No Hit
CAACTGGGGGCTTGGGCTATCCCTGAAAGGTGCTGCTTTCAGAAAT490.11228488278833154No Hit
CTCATTGGGGTGATGGTTGTGTCTTCCTGGAGCGGAAGGAGAGCCC480.1099933545681615No Hit
GGTAATGGGGGGAGCAGACAACGTGGGCTCCAAGCAGATGCAGCAG470.10770182634799147No Hit
GTGTGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.10770182634799147No Hit
CTTTTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA470.10770182634799147No Hit
CGCAGCGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT470.10770182634799147No Hit
GAAGCCGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT470.10770182634799147No Hit
CCAATAGGGGTGCTGCTCCCTGAGTGTGTGTGGAGCTGGGTGGTGT460.10541029812782143No Hit
ACACAAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT460.10541029812782143No Hit
GGTCTGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC460.10541029812782143No Hit
TTTCGAGGGGAGTGTCCTGGTGCGGAGCGTCACGTCTCGTGCGTGT460.10541029812782143No Hit
AACATAGGGGCCAATTTCTAGGAGGAACATTCAAAGAGATATAGCA450.10311876990765141No Hit
CTAACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC450.10311876990765141No Hit
GCATCTGGACCAAGTAACCTGCCCCTGGTGCAAAAAGGCAGAAGGC450.10311876990765141No Hit
GTCACTGGGGGGTGCGAAGCCGGCCTCCGCCAACATGTACTACAAG450.10311876990765141No Hit
CTGAGAGGGGGTTCCGACTTTCCGGGTAAAGATGGCAGAGCGCGGT450.10311876990765141No Hit
CATCTAGGGATATAGGCTTACGGTAGGTCCGAATGGCACAAAGCTT440.10082724168748139No Hit
TTATGCGGGGAGAGCGCCTGCGTACGGCTCGCCGCGGTGGCTGGCG440.10082724168748139No Hit
GGCTATGGGGACCAGCTCGCGACCTCCTGAGGCCCTGATGGCTGCC440.10082724168748139No Hit
GCAACAGGGAATATTTTTTGATGTACAAAACTTTACATTTTTTTCC440.10082724168748139No Hit
GCACTGGGGGGGAAAACCGATTACCTCAACTTGAATATGAAACTGT440.10082724168748139No Hit
ATTTTTGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA440.10082724168748139No Hit
AATACCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC440.10082724168748139No Hit
CTTCGCGGGGGACTGTAGCGGTGAAGGGCCGGAGGGGGCTCTGCGT440.10082724168748139No Hit
CAGACGGGGACACTGAGGTTCCTGTGTTTGGAAATCCGAAGATGCC440.10082724168748139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)