FastQCFastQC Report
Sat 31 Dec 2022
SRR5843527.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843527.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41589
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.1274375435812354No Hit
CAACTGGGGGCTTGGGCTATCCCTGAAAGGTGCTGCTTTCAGAAAT530.1274375435812354No Hit
CTCATTGGGGTGATGGTTGTGTCTTCCTGGAGCGGAAGGAGAGCCC530.1274375435812354No Hit
GAAGCCGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT510.12262857967250955No Hit
GCAACAGGGAATATTTTTTGATGTACAAAACTTTACATTTTTTTCC480.11541513380942076No Hit
GCATCTGGACCAAGTAACCTGCCCCTGGTGCAAAAAGGCAGAAGGC480.11541513380942076No Hit
TATAATGGGAGACTGGAAGCGAGGCTGTGCTGCTGGGATGCCAGCT470.11301065185505782No Hit
ACACAAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT460.11060616990069488No Hit
GATCCAGGGGACAAACTATGGTACCAGAATCTGCCAAAGATCCCCT460.11060616990069488No Hit
TCCGCTAGGGTGATTCAGAAAATGACTTTGGAAACTACAACTGTAC460.11060616990069488No Hit
ACTTCAGGGGGGCCCGGATGTTCGGGCGCTGCGTTCGGACCCGCTG460.11060616990069488No Hit
AATACCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC450.10820168794633195No Hit
CGCAGCGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT450.10820168794633195No Hit
ACAACGGGGGATGCCAACAATGCCAAGGCTGTGGTGAAGACTTTCC450.10820168794633195No Hit
ACTCCAGGGCCCTGTGGCTGTGTACACTTGGGAAGGGAACCAGGTG450.10820168794633195No Hit
GTTTCTGGGGACTGCTGGTGGATGGGCAGCGCGTCCGTCTGCCACG440.10579720599196903No Hit
TTCGTAAGGGGGTTGAGGTTTTTTCTTCAGCAAGTACACCATGTCT440.10579720599196903No Hit
GCTCATGGGAGAGGAGGAGACAGTTCGGTCGCGTCAGCCCGGCCCA440.10579720599196903No Hit
AATTCTGGGATGACTTTGGATGGAGGACATGCCTACATTGCAGGCC430.10339272403760609No Hit
CATCATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC430.10339272403760609No Hit
ATTATAGGGGGAGGCTTCCCTGGACCCCAGCGAGACCCTGGCCTCT430.10339272403760609No Hit
CATTCAGGGGCAACCAATAGCCAACAGGCTTCACTCGGAAGGACTG420.10098824208324318No Hit
GTAGTGGGGCCTCTTAATACTCAGCTCTCAACACAGGTGGGCAGAG420.10098824208324318No Hit
GTGTGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC420.10098824208324318No Hit
TGCTTGGGGTCCTGTTGCCCTTGCTAAACATGGCGCTGGCTAGCGT420.10098824208324318No Hit
GGCTATGGGGACCAGCTCGCGACCTCCTGAGGCCCTGATGGCTGCC420.10098824208324318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)