FastQCFastQC Report
Sat 31 Dec 2022
SRR5843520.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843520.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43423
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAATGGGCTGTCTGTGGATGTGGTGGACCAATGTCTCATCTGCC500.11514635101213644No Hit
CAATGGGGGAGATTCTCAAAGTGGCACAGGAACACTTTGGCAAAGG500.11514635101213644No Hit
TCTCGAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC480.11054049697165097No Hit
TTTTCAGGGAGCCTTTGGTGATCCTCCAGGACCTAAGGTTTCGGTA480.11054049697165097No Hit
TAGCGGGGGGGAAACAGTAGAGTAGGAGACTTTAAAATGGAGACCT480.11054049697165097No Hit
CATAAAGGGATTACCACCTAACTTTGTTTACATTCTTCCAGATTCT460.10593464293116552No Hit
ACTACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC460.10593464293116552No Hit
AACTCTGGGGAGCGCATCAGACCATGGTTCGAGATGGTGTCTACTT450.1036317159109228No Hit
GAGTATGGGAAGGCCAAGTACAAGGCCAGCGAGAACGCCATTGTAT450.1036317159109228No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG450.1036317159109228No Hit
TTTTATGGGGCAAGGCCCTGCAGATAGAAATGAGATGGAGGCTGGT440.10132878889068005No Hit
TACATGGGGGGAAATCGAAACTTATTTCAGCAGCTGTCTTCAGTCA440.10132878889068005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)