FastQCFastQC Report
Sat 31 Dec 2022
SRR5843519.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843519.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41741
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTCAGGGAGCCTTTGGTGATCCTCCAGGACCTAAGGTTTCGGTA480.11499484918904675No Hit
AATATGGGGATGTCACTGCGAGACGTCACTGCGTCACCGAGACGTG460.11020339713950314No Hit
GCACTTGGGGGGCCTAAAGGAGCAGCGAAGTAGGCGTAGGGGAATT440.1054119450899595No Hit
GTTACCCCTAGAGTGTTGAGCCTGCTGATTTCATTTAGGACAAATG440.1054119450899595No Hit
GATCCAGGGCGATCTGAGACAGGGATGACCCACCAAACTCATGCAT440.1054119450899595No Hit
ACTTATGGGGATGGACCCAAATCCGAGAGCAGCCCTGGAGCGCCAA430.10301621906518771No Hit
TCAACGGGGAGTCTGACCATGGAAGGGAAGACTGAGGCAGTAGTCT430.10301621906518771No Hit
GCATCCCAACTTGCGCAGAACCATCCAGCAGATCCTGTCCCAGGGG430.10301621906518771No Hit
AACGCCGGGGATCCCGGGCGGCGCGAACGGCCCAGCCATGTCCGCA420.1006204930404159No Hit
TAGCGGGGGGGAAACAGTAGAGTAGGAGACTTTAAAATGGAGACCT420.1006204930404159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)