FastQCFastQC Report
Sat 31 Dec 2022
SRR5843516.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843516.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67236
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGTAGGGCCCTTTCATCAGTCTTCCCGCGTCCGCCGATTCCTCC910.13534416086620263No Hit
AAACTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC910.13534416086620263No Hit
GCGGTGGGGAGGAGATCGAGCACTTTGGAATCAAGATCTATCAGTT890.13236956392408827No Hit
ACATGTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT800.11898387768457375No Hit
TCCATAGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC780.11600928074245939No Hit
TGTGCAGGGGACCGCAGGACCGACGAGCCCTTCCGTTGCCCTCACC770.11452198227140221No Hit
CTGAATGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT770.11452198227140221No Hit
ACGTCCGGGAGCAGAAACAAAGAAAAGTAAACATGAAGTGGGGGAG770.11452198227140221No Hit
TCAGGGGGATCTCCATCAAGGCTTCTGCAAACATGGACCTCATGAG760.11303468380034504No Hit
TACGACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC750.11154738532928789No Hit
CATTTGGGGGGGGATTCGGTGGGCCTGTTGCGGGGCTCAGATGATG740.11006008685823072No Hit
GCACAAGGGAGGCTGCAAGATGGCGGCTTCCATCTTCACGGGCGCC740.11006008685823072No Hit
ACACAAGGGAGGGGCTCAGGGGTCAGGCATCCTCCACATTCCCTCC730.10857278838717355No Hit
CATAAAGGGGGACTGGTGCTGATTCCAAAAAAAGTTAATTTAATAA730.10857278838717355No Hit
ATCAACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC730.10857278838717355No Hit
GCATCAGCGGGTCAACATTGTGCCTATCTTGGCTAAGGCGGACACA720.10708548991611637No Hit
CAGCTAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA720.10708548991611637No Hit
AATCGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA700.10411089297400203No Hit
GGTACTGGGGGCCCTCAAAGGCTCCGCCTCTGCTGCTTGAATCCCA700.10411089297400203No Hit
AAGCACGGGAGTGGAGCTGGACTCAGGTGATGGGAACATCACGCTC690.10262359450294485No Hit
TCAATAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA680.10113629603188767No Hit
GTTAATGGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCC680.10113629603188767No Hit
CGTAACGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGCC680.10113629603188767No Hit
CAATATGGGAAGGTCTATGCTGGAGAGAACTTTTGAGCCAAGCCTG680.10113629603188767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)