FastQCFastQC Report
Sat 31 Dec 2022
SRR5843515.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843515.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63438
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGTAGGGCCCTTTCATCAGTCTTCCCGCGTCCGCCGATTCCTCC880.13871811847788393No Hit
ACATGTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT820.12926006494530093No Hit
CAGCTAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA790.12453103817900943No Hit
GTCATTGGGTATGTCACCCCACCAAAGCCAACTCTGATTCTGTTCA750.11822566915728742No Hit
GTCTGTGGGCATTTTAACTGTGAATTTGAATAGGCCACTCTTTGCG750.11822566915728742No Hit
CGAATTGGGGACTAACTGGGCATCTTCAACCAACCAAACTGACTCA750.11822566915728742No Hit
CGTTGGGGAATTGGATGAAGAAAAGCAGAGCGCCTCTGGTAGGTGA720.11349664239099592No Hit
CTGAATGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT720.11349664239099592No Hit
CAGCATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC710.11192030013556543No Hit
GTTAATGGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCC690.10876761562470443No Hit
ACTGCTGGGTCTGAAAGACAACTGGAGTCCTGCTTTGACTATTTCA690.10876761562470443No Hit
GCACAAGGGAGGCTGCAAGATGGCGGCTTCCATCTTCACGGGCGCC690.10876761562470443No Hit
TCTTTTGGGTCATCACAGTGTCTAGCTTCAGCTTCTCAGAGCTGGA680.10719127336927393No Hit
GCGGTGGGGAGGAGATCGAGCACTTTGGAATCAAGATCTATCAGTT670.10561493111384344No Hit
ACGTCCGGGAGCAGAAACAAAGAAAAGTAAACATGAAGTGGGGGAG670.10561493111384344No Hit
GTTTCTGGGCACCACCTCCCATGTGGCGTAGGTCACCCCCACGGAT670.10561493111384344No Hit
GTTCTCGGGGGAACGCGAGGAAGTCGGAGAGCTTGCAGTTGCAGCT660.10403858885841294No Hit
TCAACGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT660.10403858885841294No Hit
AGCTACGGGACCAGCGACATCGGGATGCAGTTTTTTGACCCAAGGA660.10403858885841294No Hit
TGAAATGGGGACCTCGAACAAGTGACACAGCTCAGTTTTCTTCTGG660.10403858885841294No Hit
AATCAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT660.10403858885841294No Hit
AATAATGGGGATGATATTAAGGCAAAAAGGCTGTGTGTGATCCAGT650.10246224660298243No Hit
ATCAACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC650.10246224660298243No Hit
CACGCTGGGGGGCAAACCTGTGCCCATACATGGCAGCCGGAAGGGG650.10246224660298243No Hit
GCCTGAGCTCCTTCCCCACGAAGGGTTTCCTCCTGCCTGGCATTTG650.10246224660298243No Hit
CGATTCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA650.10246224660298243No Hit
TTGCTGGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC640.10088590434755194No Hit
CCAGGCTCACCAGCTGTCCCAGCTGCAGGCGCTGGCCCTGCCCCTG640.10088590434755194No Hit
ACAATGGGGGAAAAAACAGAGGGGAGGAGGCCGGCGGCCAGCAGCA640.10088590434755194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)