FastQCFastQC Report
Sat 31 Dec 2022
SRR5843511.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843511.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49679
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA910.18317598985486827No Hit
TCTTTAGGGGCTTTTTTTTCCGGTTGCGGCGCCGCGCGGTGAGGTT780.1570079913041728No Hit
AACCATGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA770.15499506833873467No Hit
CTCTCAGGGACATGTTAAGAAAACAAAAAACCAGTTTAGCAGAGGA740.14895629944242034No Hit
GCTGCTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA740.14895629944242034No Hit
TTTCTGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT720.1449304535115441No Hit
GCTGCTGGGCGATCTCTAGCAGGGGGTTTGGAATGGAGCAGGAATA710.142917530546106No Hit
CAAAGTGGGGGAGGGGATGCCACAGAAAGGAAGTGGCAGAGCCAAA690.13889168461522977No Hit
CAGTTAGGGGGACATACCCTGGCTCTCTGACCACTCCGCCTCTGCT670.13486583868435353No Hit
TGCAAAGGGCTTCAAACGTGTGAGGTTGTTCATGGTAGCCAGTGAA670.13486583868435353No Hit
TACCTTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG660.13285291571891544No Hit
GCCCCAGCCTTTCCTCTTAGACAAGTGATGTCACCCTGATGTCACA660.13285291571891544No Hit
GATCATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT660.13285291571891544No Hit
GGAGGTGGGATACAAACCAGGCAGAACAGTGCCGAAAAATAGCTGC660.13285291571891544No Hit
TGTAGAGGGAAGAAATCTTTACTTTATAACTTGTCAGTAGAAAAGT650.13083999275347732No Hit
TGATGCGGGCGATCTATGGATGGGGAATCAAGAGGAAAAATGACAG650.13083999275347732No Hit
CTGAACCTGGGAGCCTCCCTCAAGGGTGGAAAGTGAACAGCACCCC650.13083999275347732No Hit
CAGTTTGGGATCCCCTGCACCCCACCAGCTGATTTCGAGCGTGGCA630.1268141468226011No Hit
ATTTGAGGGGGGCGCGGGTGCGGCCAGAAGAGACGCGCGGAGCCGC630.1268141468226011No Hit
GAAACAGGGCGTCATCCTTGTCTCCATGGTGACCGCTTCATCACCA630.1268141468226011No Hit
GGCAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC630.1268141468226011No Hit
TGAACAGGGACAACAAGTGGCACAAGATGGAACAGAAGTTTCGCAT620.12480122385716298No Hit
TCAAGCGGGATCAACAGGAACATCCTCGTGTTAGATATTGAGGCTG620.12480122385716298No Hit
GTTCGAGGGGAGTACATTGTAGCTGTCTTCAGACACACCAGAAGAG620.12480122385716298No Hit
TACTCAGGGGTGGGTGGACGATGTGCGAGCGGTTTGGCGTGCTGGG620.12480122385716298No Hit
AACCATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT610.12278830089172488No Hit
CTTCAAGGGACTGTAGCATTTCTGTCATGTAAGAGGTGCTGACAGC610.12278830089172488No Hit
GTTCTTGGGCGACAGAGACAATGACCTCCGGTTGGCCCAGCACATC600.12077537792628676No Hit
CTTGCAGGAGACAACAGAAAGCCTACATTGCTACCCAGGGGCCCTT590.11876245496084865No Hit
TTATCAGGGGAGGTGATGGACTCAGTGCGCCGTGGTGCCCAGCTGG590.11876245496084865No Hit
TCTGTTGGGTCCGAAAAGTACAGGGACTTTCTGGTAAGGAACCCCC590.11876245496084865No Hit
CGCAGGGGACAACAACGAGTTGGTCAAGTGTGAGCGTCGGGCACTG590.11876245496084865No Hit
ATAAGCGGGGCTCTTTGTCTCGGGCCTGAGTTCGTAGGCGCAGCCG580.11674953199541052No Hit
GGTGGTGGGGTCCCTCATGAACTTCAGAAACTACAGTGTCCCAAGA580.11674953199541052No Hit
CAGCTAAACCGACGCAGTTTTGCTCCTTGGATTCTGAGCCCGGGCA580.11674953199541052No Hit
TACTGGGGGGGCCCTCCTGCTGGCTGAGGGCTTCTACACCACCGGC580.11674953199541052No Hit
GCTACACGGGGATGACCCACCAAACTCATGCATATCACATAGTTAA580.11674953199541052No Hit
AATGACGGGGGAATACAGCACTAGAAACCTTGCGGAAGATGCCTCA580.11674953199541052No Hit
TCCAATGGGGGCTGTTTTGATTGAGAAACACATTTTGAAACAGGTC580.11674953199541052No Hit
GCACAAGGGACATGTAGTTACTTACTACTCCGGAAAAAAAGAACCT570.11473660902997242No Hit
AGGGGTGGCTTCACACGGGGTTGACATTCTTGGCTTACGGACCATC570.11473660902997242No Hit
AGCTGTGGGGAGAGAAATTCCTAGGCAAATGGATGGACCTGGAGGG570.11473660902997242No Hit
GCATTCTTTTGATGTAAAGAAGCTATCGGAGAAGATAATGCATTTT570.11473660902997242No Hit
ATCACCGGGATGCCCATTATGCCCTATAGTGGGGTGATGCTCCGAG570.11473660902997242No Hit
AGCACTGGGGAGAAAGGAGAGAGAGAGATTGAGATTTAATAAGAAA560.11272368606453431No Hit
TAGACAGGAGGTGGCTGAGCTCTGTGTTGACATCTTTGCTACTGTG560.11272368606453431No Hit
ACGTCCGGGATTCCCAGTATTGGGCTCGGAATACAATCTGTTCTCT560.11272368606453431No Hit
CAACTAGGGACTATAAGCAAGGCTTCTCTTTAATTGACTCTTTTGT560.11272368606453431No Hit
CTATACGGGAGAAACAAGAAGGGATGTGCTCAGCTTTGCATGTCAG560.11272368606453431No Hit
TTCACGGGGGGATCGCTTTGATGACCACAAGGGCCCCACCATCACT550.1107107630990962No Hit
ACTCCTGGGATCCCGCTGGAGGAGGGGACCCAATTCTCTACCAGCA550.1107107630990962No Hit
AATGCCGGGGTGCCACTTGAGGTGTGGGCCTCGGCTTCACGTTGCA550.1107107630990962No Hit
CTACAAGGGACATATACTACACTAAGCTACAAGGAAAATCCCTCTT550.1107107630990962No Hit
CTTCCGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC550.1107107630990962No Hit
TCCTAAGGGTACATCTCTCGGATTGGTTTCATTAAAGGAGAAGCAC550.1107107630990962No Hit
AGCCAAGGGGATTTTCAACTGACCACAGCACAGGCATAATTTTCTT550.1107107630990962No Hit
GAGTACCGGGATGCCACAACTAGATACATCAACATGATTTATCACA550.1107107630990962No Hit
CTAAGAGGGATGGTTGGCATGCATAATAGCATTTCTTATTAAAATA540.10869784013365809No Hit
AGTAAGGGGATCTTAATTCGGGGATCTTTCGCCGGGGATTCCAAGA540.10869784013365809No Hit
ATGCTTTTGGGGATGAGTGTGCACGCCAGCGGGGATGCCTCGCACA540.10869784013365809No Hit
CCATAAGGGGTTGGTGGTAAACTGGCCTCAGGCCAGGACCAGGCAG540.10869784013365809No Hit
ACGATAGGGACACTGTCACCGACTTGGTGGAGTATAGCATCATCAT540.10869784013365809No Hit
TGACGCGGGAGTCCCAGTAATGTAAAGTTTTTGCTTTAGTAGTTCT540.10869784013365809No Hit
TCAAAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC540.10869784013365809No Hit
CAATCAGGGGAGCTAGAGGCAGCCAGTCCTACTACCAGGAGCCGCC540.10869784013365809No Hit
GCCACAGGGATGTTCCTTTTGCAGGAGTGGCTGTACCTGCAGAAAG530.10668491716821996No Hit
AGATTAGGGACTGCTAAAATGAAAGTAATTCTCAAGATACTGTTGT530.10668491716821996No Hit
AAAGATGGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAG530.10668491716821996No Hit
TACCCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.10668491716821996No Hit
CTTGATGGGTTCATAACTCTGCTTGCTCCACTGTCTGTGGGTTCAG520.10467199420278187No Hit
ACGCTAGGGGGTTTGTTAGAGGTGCGGTGACATGGCTCCTCCGGTT520.10467199420278187No Hit
AAACGGGGAATGCAGAAATGAGATACCGGGAAAATCTCCCTCTGGT520.10467199420278187No Hit
GGGCATGGGATCACTAACAACCATAAAAGTAAAAACCCCTTGAGAA510.10265907123734376No Hit
CAAATTGGGGTCTCCCATAATTGATGTCTGGCATTGATTTGAAACT510.10265907123734376No Hit
TCTACCGGGGAGCAAATGGCTGCTCTTCGCATGCTGTGGATGGGTT510.10265907123734376No Hit
TTTCCCGGGGGCTTTGTACCTGGGACTTCGTTGTGGGAAGGAAATT510.10265907123734376No Hit
TGCACAGGGAATCTTCATTGTTGCAAGTAATGGTTTTGAGGTTTTA510.10265907123734376No Hit
AAATCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.10265907123734376No Hit
CTGACTGGGGGCTGTGCGGGGCTCTGGCTGCGCCTGGTCTGGCAGG510.10265907123734376No Hit
TTGTCGCGGGATGCCACAACTAGATACATCAACATGATTTATCACA510.10265907123734376No Hit
CAGCCAGGGGGATCTGAAAGCAACAATCGCCAGCCCCTACTGTCGT500.10064614827190563No Hit
TAGTCAGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCTT500.10064614827190563No Hit
CTAACTGGGATAGTAAAGAATGTTCATGTGACAAAGTAATGGTCAT500.10064614827190563No Hit
TACAACGGGGTGACTTATTTTTGTTAACATCAGATACCTGTCTTCG500.10064614827190563No Hit
CCCAAAGGGGACTAATACACTGAGATTCTGCTTTTTCTTCCCGCAT500.10064614827190563No Hit
TGAAATGGGGATGGTGGGCAGACAGCTCCTGCCAGTATCCGCCTCT500.10064614827190563No Hit
AGCTATGGGGGAGATGGGGCTGGGGGTCCATGCTCAGCTGAAAAAA500.10064614827190563No Hit
TGTCCGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT500.10064614827190563No Hit
ACCTCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC500.10064614827190563No Hit
TCATTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC500.10064614827190563No Hit
ACAGCAGGGGCTGCTGCCTGGAGAGAACAGGACCGTGTTCTGCCCC500.10064614827190563No Hit
GTTCTGGGAGGACCACCTGAAACGGGCATCGTCGCTCTTCGTTGTT500.10064614827190563No Hit
TTTAATGGGGTTTCTTCTTTCTTTCTCTTCGATACAATTTACCATG500.10064614827190563No Hit
TGCTCTGGGTGCTGTGGTCGCCTTTGCCATCCTGATTGCCATTGTG500.10064614827190563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)