FastQCFastQC Report
Sat 31 Dec 2022
SRR5843506.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843506.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45276
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.14135524339605973No Hit
AAGTATGGGTATAACAACGGTGCAATCTCAGCTAAACCGACGCAGT610.13472921636186944No Hit
ACGGTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.13031186500574257No Hit
TAACGTGGGTGTCTCCATGGTGACCGCTTCATCACCATGGTTACAC550.12147716229348883No Hit
TATGCTGGGGTGAGGTTTGTAGAAAGAAACAGCCTGGCCAGGACTG550.12147716229348883No Hit
GCTACAGGGATCTGACAGAATTCCAGACCAACCTGGTACCCTACCC540.11926848661542538No Hit
GATGATGGGGGATTCTGTTGCTTTAAGCATTTCATGACTGAGCTGC530.11705981093736197No Hit
TAGTGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.11705981093736197No Hit
CCGTAAGGGTAAACCGACGCAGTTTTGCTCCTTGGATTCTGAGCCC510.11264245958123509No Hit
GTCAGGAGGGTTTTAATTGATGGCACACCTGTGTAGACACAGGAGG500.11043378390317167No Hit
TCACCAGGGGAGTTTATGTTGTTGCTTTTGTTGGGGGAGTGGGGTT500.11043378390317167No Hit
CTTGGTGGGCGTGTCGGCACGAAGTGTCTTCCGATGCAGTGTCCAG490.10822510822510822No Hit
GATCAAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG490.10822510822510822No Hit
GCAGCACGGGACCTCGATCCATCGCGTATAGGGACGCCCCCTGCTC480.10601643254704478No Hit
CCTGCAGGGAGCTCAGTGAAGCAAGGTGACATGGGGCAGTACAGCA480.10601643254704478No Hit
TCTGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.10601643254704478No Hit
TGGCCAGGGGTGGCTGTGCGAGCCACCTTGGGATGACTCCCTAAGC470.10380775686898136No Hit
CACACAGGGGTGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC470.10380775686898136No Hit
GCATATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.10380775686898136No Hit
ACTAGTGGGGGACTCTTCGGATTCTGACTCCAACTGAGGCTCAGCC460.10159908119091793No Hit
TCAAAAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT460.10159908119091793No Hit
GCTTAAGGGGAGAAACCCTCTGGTAGCCATGCATGCACATTTGGAA460.10159908119091793No Hit
AGCGTAGGGGGGCGCGGGAGGAGCTGGTGCTGGGTGGAGGACGCGG460.10159908119091793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)