FastQCFastQC Report
Sat 31 Dec 2022
SRR5843505.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843505.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43607
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGTTGGGCCTTGATGACAAGGATCCAGCCTTCTGGTGTTTTTGA590.13529937854014265No Hit
TGGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.1330061687343775No Hit
TACTTCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT550.12612653931708212No Hit
CCGTAAGGGTAAACCGACGCAGTTTTGCTCCTTGGATTCTGAGCCC540.123833329511317No Hit
AAGTATGGGTATAACAACGGTGCAATCTCAGCTAAACCGACGCAGT540.123833329511317No Hit
TAGTGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.12154011970555187No Hit
GTCAGGAGGGTTTTAATTGATGGCACACCTGTGTAGACACAGGAGG520.11924690989978673No Hit
TCAATGGGGGGTTTTTAGCCAGGCTACTGTCCACAGAAGGAAGAGA510.1169537000940216No Hit
ACGGTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.11466049028825648No Hit
TTAACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.11236728048249134No Hit
CTAAACTCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATA490.11236728048249134No Hit
CATAATGGGGATGACTTACAATTCATCCTCCTTGTATCTCAAGTGA480.11007407067672621No Hit
ATTCGCGGGGAGGGACCTCAGGTGAACAAACGCAATCACGCCGGGC480.11007407067672621No Hit
CGGGATGGGGACAGCTTCGTCTTTGTCATACTAAATGTGCTCACAA470.10778086087096109No Hit
ACATCTGGGGGGCTACTTAACCACGGCTACTCCTTTTTTAAAAATG460.10548765106519595No Hit
CAAGCAGGGATGTGGGTGTTTTGCCTGCAGGTTTGTCTAGGAACCA460.10548765106519595No Hit
ACACCAGGGGCCTTTCCGCTCGGCCGTTCTCCTGTATAGGAGGCAG450.10319444125943082No Hit
CTTTGTGGGTCCTGTAATCTGCTTGACAGGTCTTCCCTGCCCTTCT450.10319444125943082No Hit
GTACCAGGGGCGGCTGAGAAGGAGAAGGAGGTGCCAGGCGCAGACA450.10319444125943082No Hit
GACCAGGGGGTCTACTGGTGTCTTCACCACCATGGAGAAGGCCGGG450.10319444125943082No Hit
CTTGAAGGGGCCTGCCTCTGCCTCCTGAGTACTGGGATTCAAGATG450.10319444125943082No Hit
ATGCATGGGGCTCTCGGAGTCTGTGCAAAGAGGCATCCAGACGCTG450.10319444125943082No Hit
TAAGTTGGGATTTCCATTGGTTTTCTAAGCCTTGCCTGGAAATGTC450.10319444125943082No Hit
AGAATGGGATATCCAGATGACTTACCCTCTGCAAGGCCTAACCCGG440.1009012314536657No Hit
GTAAACGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA440.1009012314536657No Hit
GTAGACGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATCTGCCTC440.1009012314536657No Hit
ATCGCAGGGTGTCCAACAGCTGTGACGTGGAGGGATGACATGAGGA440.1009012314536657No Hit
ATCCGTGGGGTGACCCCAAATCTGGCATGTCAGACCCTTCTCGCTC440.1009012314536657No Hit
TTCATGGGGTGCTGAAGATGGATCATCACTGCCCCTGGCTAAACAA440.1009012314536657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)