FastQCFastQC Report
Sat 31 Dec 2022
SRR5843504.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843504.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41107
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.1775853261001776No Hit
GACTAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA600.14596054200014597No Hit
TATTGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA560.13622983920013623No Hit
ATTCTAGGGATGCGCCACCTTTCTCTCTTCTTTTCCGGCTGGAACC540.13136448780013138No Hit
ACAACAGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCA510.12406646070012407No Hit
TCACCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA500.12163378500012163No Hit
GCCTCCAGAGAACTGGCATTAAAGGTGTGTGACACCACACCTGGCC500.12163378500012163No Hit
TTCCTAGGGGAGTAAAGTCAGATGAACCAGAGGAGAGGCAGATGTC490.1192011093001192No Hit
GGTCCTGGGAAGTCCTGTGGCTAATGAAAGCAATTGAAAACCAAAG490.1192011093001192No Hit
TCACTTGGGGGCAGCTTCTATGTTGGCCTGGGCACACGCATCGGCT490.1192011093001192No Hit
TTACCAGGGGTTTGGGGAGAAGCTGAACGGCACAGACCCCGAGGAT480.11676843360011677No Hit
TTGCATGGGATGGCTACGATGGCAGGTTTAGCATTTTTGGGAAGGA480.11676843360011677No Hit
TGCTCTGGGGGAAGCTTATTGCAGACAATGATGAAGACAACCCACA470.11433575790011433No Hit
GCCAAAGGGGGGAAAAAAAAGGTCCAGCAGAGCTCAGCAGCCAAGA470.11433575790011433No Hit
TTATCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC460.11190308220011191No Hit
TGCACAGGGGGGAATTCCCCGGGCCAATTGCCTCTATAACTAGAGC450.10947040650010947No Hit
ACTAACGGGGGGGAATTCAGATAAAACGAATAGTCGTAACCAAACA450.10947040650010947No Hit
GCTAGAGGGCCTTTCCGCTCGGCCGTTCTCCTGTATAGGAGGCAGC450.10947040650010947No Hit
CATGTAGGGATCTGGAGGGCATGATGAACGAGGCGCCAGGGCCCAT450.10947040650010947No Hit
TAGTCGCGGGGGTGCACTGTCAAGATGGCTGCTGGGCTGCGGAAAC450.10947040650010947No Hit
GCGATGGGATGCCACAACTAGATACATCAACATGATTTATCACAAT440.10703773080010703No Hit
AATTTGGGGGGACCAGGAGGTGCGGCTGCCATGGCGCGGAATGTGT440.10703773080010703No Hit
TTGTCGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAAT440.10703773080010703No Hit
TACTGCAGGGATATCATGTTGGTGCATGGCATTCTAGAAACCACTT440.10703773080010703No Hit
GTCAATGGGATGATGACGAGACGTAATTCGTGAAGGAACCTACCAA440.10703773080010703No Hit
TGCAAAGGGACACAGTGATAGTGCAAAACCCAGAATGGATGTCCTC440.10703773080010703No Hit
GATAAGGGGGTCTGGGAGGAAGCTTCAGAACTGGGGTGGGCTCCCG440.10703773080010703No Hit
CTTCTCGGGAAGAAGGGGGCGCTAGAAAAATCACTCAGTGGTTAAG430.1046050551001046No Hit
TAAGTCTGGGGATCTTGCGCTGGGATGACCCACCAAACTCATGCAT430.1046050551001046No Hit
ACGCCTGGGGATAAGGTGCTAACATAGATTTAACTGAATACATTAA430.1046050551001046No Hit
ATGACAGGGAGTAAAGTCAGATGAACCAGAGGAGAGGCAGATGTCA420.10217237940010218No Hit
ACAACTGGGATCCTTTAATTAAATTGTTTGTCAGAGGTATTCTCTT420.10217237940010218No Hit
CGTTATGGGACCTCATGAAGATCCTGACTGAGCGTGGCTATTCCTT420.10217237940010218No Hit
AAATGAGGGATGTTCTTTTCTGAATGCTGCTATCACTTGTGTTTGC420.10217237940010218No Hit
TCGAATGGGAACTAAAGCATTTAAGGCACTATTTATTTTAGAATCA420.10217237940010218No Hit
GTCCGAGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC420.10217237940010218No Hit
CAACCAGGGATCGCCCCTCGTTTATGAACTAGCCTATCGCAGACGG420.10217237940010218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)