FastQCFastQC Report
Sat 31 Dec 2022
SRR5843503.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843503.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39519
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA580.14676484728864597No Hit
TACTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.14676484728864597No Hit
TTACCAGGGGTTTGGGGAGAAGCTGAACGGCACAGACCCCGAGGAT560.1417039904855892No Hit
GAATGAGGGATTGCAGACAATGATGAAGACAACCCACAGTCAGTAA530.13411270528100408No Hit
ATTCTAGGGATGCGCCACCTTTCTCTCTTCTTTTCCGGCTGGAACC530.13411270528100408No Hit
GGTCTAGGGGGGCAGAGGAGGACGAGTCCAACACTGGAGGCCGAGG520.13158227687947568No Hit
GGCAAAGGGGGCGCCCGCGCTGCACCTGCGACTGTCGCCGCCGCCG500.12652142007641892No Hit
ACTTCTGGGGGGTTCTCCCAGCACGCAGCTGGAGACCTGAGAACAG500.12652142007641892No Hit
CATGTAGGGATCTGGAGGGCATGATGAACGAGGCGCCAGGGCCCAT480.12146056327336219No Hit
AATGCAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT460.11639970647030543No Hit
GCAGCTGGGGATATTGAGGCTGCTTCGTGTCGGCACGAAGTGTCTT460.11639970647030543No Hit
GCCTCCAGAGAACTGGCATTAAAGGTGTGTGACACCACACCTGGCC460.11639970647030543No Hit
TATTGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA450.11386927806877704No Hit
CAATTGGGGGCTTTTTTCCCCCTTAGCGCGGCCGACTCTGCAGGTC440.11133884966724866No Hit
AGGCACGGGTGGCATGGGGATGACGTATGCTATGTTAATCTTGATG440.11133884966724866No Hit
TGCTCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT440.11133884966724866No Hit
ATCCACGGGAAGGCCAACCGTGAAAAGATGACCCAGATCATGTTTG440.11133884966724866No Hit
GGATCTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA440.11133884966724866No Hit
TAAGTCTGGGGATCTTGCGCTGGGATGACCCACCAAACTCATGCAT430.10880842126572028No Hit
GTGCGTGGGGGGAATTCACTGTCCTTTCATCCATAAGCGGAGAAAG420.1062779928641919No Hit
TTTGCTGGGTCAAGAAGAAGGAGCTACTCCCCACCACCAGCACCCA420.1062779928641919No Hit
TATACAGGGGGCCATTACTGCCGGAAAAGGTCCAGCAGAGCTCAGC410.10374756446266352No Hit
CCTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.10374756446266352No Hit
ACAACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC410.10374756446266352No Hit
CTGTAAGGGGGCCATTACTGCCGGAAAAGGTCCAGCAGAGCTCAGC410.10374756446266352No Hit
ACTATTGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCCA410.10374756446266352No Hit
TCACTTGGGGGCAGCTTCTATGTTGGCCTGGGCACACGCATCGGCT410.10374756446266352No Hit
ATGACAGGGAGTAAAGTCAGATGAACCAGAGGAGAGGCAGATGTCA400.10121713606113514No Hit
TCACCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA400.10121713606113514No Hit
TAGTAGGGGATGAATGCTGGATGCTGCACTTTCCTGTGGCTGTGTA400.10121713606113514No Hit
TCCGCAGGGGCAGCCCGGGTCGATTATAACAACGGTGCAATCTCAG400.10121713606113514No Hit
TAGTCGCGGGGGTGCACTGTCAAGATGGCTGCTGGGCTGCGGAAAC400.10121713606113514No Hit
CGCTCAGGGGAGGCTTCTGCTGACGGCGTCGGACCTGCGGAGCCCA400.10121713606113514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)