FastQCFastQC Report
Sat 31 Dec 2022
SRR5843502.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843502.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47066
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTGCGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA590.12535588322780775No Hit
CCACTGGGGTATTGTTTTGATTGCCTTTTTTTTGTAGAAATAAAAT570.12110653125398377No Hit
TCCCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.11473250329324777No Hit
ACCAAAAGGGGGAAGAAGATGGTGTTCGGAAGCAAGCCTGGGGATA510.10835847533251178No Hit
TCTAAGGGGGATCTTCCACCGGGGGGAATTCACACCGGCGCACGCC510.10835847533251178No Hit
ATGCCTGGGTGGCACTGCCCTTCTCAACTTCGTGCTGTCTCTGATA500.1062337993455998No Hit
ACCGTCAGGGGGGAGCGCCGGAGTCCTCCTCCTCCGCCGCCGCCCA500.1062337993455998No Hit
CACGTAGGGTCCTACGTCTATCTGTCTATGTCTTGTTATTTTGACC490.1041091233586878No Hit
CTTTAAGGGGCTACATCTCCCGGCTCAGACCCGGGGCGCTTCGCAA490.1041091233586878No Hit
CTGCATGGGATCCATTTGGTGGTTGGTTTTTAACCCAAACTCAGTG490.1041091233586878No Hit
CTGCTTGGGGGATTAGATGTAGACACACGAGCTTACTTTACATCAG480.1019844473717758No Hit
GGCCCTGGGATTTTGAGGACTCATGGTAGGGCCAAGTGCTAGAACC480.1019844473717758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)