FastQCFastQC Report
Sat 31 Dec 2022
SRR5843501.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843501.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45195
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCTGGGGTACTGGGGCATATAAAGTTTGCAAAACCAAGGGACCT500.11063170704723974No Hit
TCCCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.10620643876535014No Hit
GTTGAGGGGGAAGAGGACCTGGGAGAAGCTGTTGCTCGCAGCTCGA480.10620643876535014No Hit
CATACAGGGATACCATTCAGGAACCTGGACCAGAGGTGGTAATAAA460.10178117048346055No Hit
ACGATGGGGATCCCGCTGGAGGAGGGGACCCAATTCTCTACCAGCA460.10178117048346055No Hit
CCATTGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGA460.10178117048346055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)