FastQCFastQC Report
Sat 31 Dec 2022
SRR5843492.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843492.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39787
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCAAGGGGTGATACGCACACTGATAACTATGCGCAGACGCTTGA600.15080302611405735No Hit
TTGATGGGGAACCTTTTATATCCGAAAGCATTCTCCTTCACCATGG590.14828964234548972No Hit
GACAATGGGATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCACGA550.13823610727121927No Hit
CGCAAAGGGGCTCTTTCCCAGTATTACTGTTGGGAGAAGTCCCCTT550.13823610727121927No Hit
GCTTCAGGGAAAGATTTGGGGCATAGAAAAGAGGAGAACAGAAGGC530.133209339734084No Hit
GGACATGGGGAGCCCATGATACAATTAAGAGGAATGTCATGGGGGG530.133209339734084No Hit
ACCGTAGGGAACTCAGCAGGGATGTGAACAAAAGTTTCCGGGATTG520.13069595596551636No Hit
CAGCTCGGGGTGGTCATTCAGGTCATAGAACAGCTGAGGGAACAAG520.13069595596551636No Hit
ATCTGTGGGATCTCACTCAGGATGATATCCTCCAGATCCATCCATT510.12818257219694876No Hit
TGGTGTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG510.12818257219694876No Hit
TTTTAGGGGGATCAAGTTAGTGCCACATAATGAGAGCGCATGGAAC500.12566918842838112No Hit
ATAGTAGGGAGATCAAACAGTGAAGATTTGGGACCTGCGCCAAATT500.12566918842838112No Hit
TTTCCTGGGGAGCGTCTCTTAAAGCTGGCGGTCCCCAACCATCTGA490.1231558046598135No Hit
AGTCTAGGGGTTGAGACTGGACGTTGGAGCTGCTTGAACAGTATAA490.1231558046598135No Hit
ACTTAAGGGATACATTAATTAAATAAATAAATCTTTTAGAAAGTGG480.1206424208912459No Hit
AAACTTGGGAGGGGCAGCCTATGCTGCCAAGCGGGCCAATGCCAAC480.1206424208912459No Hit
AAAGTGGGGAGGAGCGACTGTTTGCTACCCAGCTCAGTCAGTAATA480.1206424208912459No Hit
TAGTGGGGAGATCAGCTCATTTATATCCCACTTCCTGATGAGAAGT470.11812903712267826No Hit
TTTTAGGGAGGAGGCCCCACAAAAAGCGTCATGAAGATGCCATCGT470.11812903712267826No Hit
CATTAAGGGGGGAAACTGAAGAAGAGGAATCTCAAAATCTAGGCCA470.11812903712267826No Hit
CCTAAGAGGGGACTGTCCTCATCAAGCGCAATACCACCATCCCCAC460.11561565335411064No Hit
TGGAGGGAAGATAAGCGGAGGGGTTGCCCTTCCCTCACCTCTCCTA460.11561565335411064No Hit
GATGGAGGGAATGCCATTCTGGTGGACACACCCCTGGCGGCTTTTT460.11561565335411064No Hit
TTCCGCGGGGTACCCCGGAGGCCTGTAAGTGACAGGAGGAAACAGG460.11561565335411064No Hit
GGTGCTGGGACCTTGAACCAAGTAAACATCTCCAAAACAGACGAAG460.11561565335411064No Hit
AGAAAAGGGGAGATCAAGCGGTGGTACAGCAGGCTGCGCAGCAAGT460.11561565335411064No Hit
GTGCATGGGAACCACAAGAAGAGAGATGCAGGGCACCAGAGCAAGT460.11561565335411064No Hit
CCTGCGGGGTGGGACTTGAACTGGATAGGTCCCCCAGGCTCCTGGC450.11310226958554301No Hit
AAGAGCGGGATATCTGATTTCACAGAGGCACCTGTCCTCAACATCC450.11310226958554301No Hit
CACGCACGGGAGGAAGAACCGGGCGGCTTCTCCATCAGCTTCGTCG450.11310226958554301No Hit
CAGCATGGGCTGCACGAGGGGAGCAGTGGCAAAGTCACTAGAAGTC450.11310226958554301No Hit
TCGCTAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT450.11310226958554301No Hit
AACCTAGGGTAGGATTAGATGTAGACACACGAGCTTACTTTACATC450.11310226958554301No Hit
CTCTCAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA440.1105888858169754No Hit
ACACTAGGGATGCACATGAACTTCCAAAATATGGTGTGAAAGTTGG440.1105888858169754No Hit
CGTAATGGGGGAGCCGGGGCCCTCATGATGCTGGTTGGTTTCCTGG440.1105888858169754No Hit
GTTATCGGGATATGAGGGAATTCTGAGCTGAGATTGTCCTTGTCAC440.1105888858169754No Hit
CGTTAAGGGAGGGTGAAAGCAGGGAGATTCATCTTTCATGCTCCCT440.1105888858169754No Hit
TCGTTGGGGGCTGTGCAAATATCCCAACATTGGACCAAAACATACC440.1105888858169754No Hit
TTAGATGGGATTTCACATGTAGTTACTTACTACTCCGGAAAAAAAG440.1105888858169754No Hit
ATTACTGGGGGTTCCGGGTTGCTGCGGCCAGGCTGCAGAAACGATG440.1105888858169754No Hit
CGCTATGGGGTGTTCTACAAATGTAGATGTGGAGTCAAGATAAGAA430.10807550204840777No Hit
TCTTCAGGGGAGTTTAAAACACGTATCACAACAATGGCATTTCTAT430.10807550204840777No Hit
AAAAAAGGGGATTCCCAGGGTACCTTTTGGAGAAATGCCATCCTCG430.10807550204840777No Hit
ACATCTGGGGGTCCCATGCGTGGGATGGTTTGCCTTATTGAAGACT430.10807550204840777No Hit
TAAACTGGGACGAGGCAGCTGACAGCAGTGAGCTGGCCCTGCTGGC430.10807550204840777No Hit
TCTTTTGGGGATGATGGGCCTGGGAGGTGGCATGGATTTTGACTCC430.10807550204840777No Hit
AATAAAGGGACCATAGCCTGGACAAAGGCACCAATAACTAAGATGT430.10807550204840777No Hit
AATAAAGGGCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGT430.10807550204840777No Hit
AAATAAGGGGACAGCCCAACTTGGACGCCAGGTCCGGCCGACGCCG420.10556211827984015No Hit
CATCTTGGGGGTGTCAATAGAGAAGATGCCCACCTCCTGGGAAGGG420.10556211827984015No Hit
TACGTAGGGATATCCAGAAGATTAAGTCAGGAGAGGAAGACTTTGA420.10556211827984015No Hit
ATTCATGGGCAAGGCATCTAGCTCAGGACAGAATCGGATTCCTCAT420.10556211827984015No Hit
ACGATAGGGGACTACAGTGATGAGGACAACAAGCCCCTGCAGGGCA420.10556211827984015No Hit
TCCTTGGGGGCTTGAAAGATAGAGGAAATTTGTGGAACTCCTGGAC420.10556211827984015No Hit
GACACAGGGGAGGGCAGGGTGTATATCTCTCAGACCAGCAATCGTG420.10556211827984015No Hit
AATCTGGGGAGACTCCTACATGTCAATAATCAACAAATGCATCCGA420.10556211827984015No Hit
TGTAACGGGGATTCTGCTGTGGCTTCAGAGTTCGAGCTGGTGCAGC420.10556211827984015No Hit
GGCACTGGGATAAGGAGAACTTCCTGAAACGCTTCCAGCTCACCAA420.10556211827984015No Hit
TTTATAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA420.10556211827984015No Hit
GCTTACGGGGATAGCATGGCGGAAGGCGAGCATGCGTGGAGGAAAA420.10556211827984015No Hit
TCATGTGGGAACCTCGGTGGAAAAATAACCATTCCCTGCCTCCTAG420.10556211827984015No Hit
AAAGCCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA420.10556211827984015No Hit
TGTAGTGGGGTGGGGCCCAAGATGTCCAGGAGAGGTTTGCTTCCAT420.10556211827984015No Hit
TAACATGGGGCAAGCCAAAGTGAGTGCCCTGGACCTTGCAGTTCTG420.10556211827984015No Hit
CAATTTGGGCGATCTGCCTATGGGGGCAGCTCAGGAGTGGGCCCGC420.10556211827984015No Hit
CTTCGTGGGATGGCACCGCAGCTGAGGTGAAGCAGGCAGTTTTGGC410.10304873451127254No Hit
CGCCTAGGGGAGAATGGAGGCTACGCAGACCAGACCTATGATGCAT410.10304873451127254No Hit
TCGAACGGGACTGTTGCTATTCTGCACACATATCGGAAGCAGCAAG410.10304873451127254No Hit
TAACCAGGGACTCTTTTAGTTTTTGAGTCAGGGCACATGTCTGATA410.10304873451127254No Hit
TTATTAGGGGGGCTGGGCTGCCCAGAGAGTATGTGCCCAGATGATA410.10304873451127254No Hit
TAGCCAGGGAGACCTTCGGAAGGAAGAGCAGTCGGGTGCTCTTACC410.10304873451127254No Hit
CAAAGCGGGGAGGATACATCGAAGCTAATGCAGGCCCGATGCTGCC410.10304873451127254No Hit
CGCCAAGGGGCAGATGGTACCGGGCAGTCTTGGACAGCCAAAGGGG410.10304873451127254No Hit
CTAATTGGGACTAAAGCTTTTGGACGACAACGGGAACATTGCTGAA410.10304873451127254No Hit
CTTACAGGGGGGAGAAGGAGCCAGCAGGAGAGGACGGAGGCCCAAG410.10304873451127254No Hit
ATCGTAGGGACTCTGAGCATCACTGCCCCGGCCAGCCTCAGTGTCC400.10053535074270491No Hit
TTGCTCGGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC400.10053535074270491No Hit
GTACTTGGGGTTTGGAAGAGGAGGAAAGGGGACCAAAGGGAAGTGA400.10053535074270491No Hit
TATCAAGGGAAGCTAGACTTGGTTGAGCCAGCCTTCCTTTTTTAGG400.10053535074270491No Hit
ACACACGGGGAAGCACCACTGTTATCAGGACCTGCTGATGTGCCAG400.10053535074270491No Hit
TCGCAGGGAATGTGAAAACCAAATAGGCAGGTTGTGTCTTTGGTAA400.10053535074270491No Hit
GACCGAGGGAACAATTTTTTTTCCAGTTTGTTTGAAAGGGACTGCT400.10053535074270491No Hit
TCTCACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA400.10053535074270491No Hit
CATCTAGGGCTTCCAGCGGGGGGAATTCAGATAAAACGAATAGCTC400.10053535074270491No Hit
CACCAAGGGAAAGGGTTTTTGTGAATTACGGTGGTGGGTAAGACCC400.10053535074270491No Hit
TATCTAGGGAGCTTGAAGCTGATCTCCTCATCTTTAATGATGAACT400.10053535074270491No Hit
ACTAATGGGGATTACAGAGCCCCAGCATGACAATAGCGTGTGGAAG400.10053535074270491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)