FastQCFastQC Report
Sat 31 Dec 2022
SRR5843479.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843479.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75562
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCAGGGGAGCCATTACTGCCGGAAAAGGTCCAGCAGAGCTCAGC900.11910748789073873No Hit
GCTCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA820.10852015563378417No Hit
GGCTACGGGGACTGAGCAGGTGCCAGGCATCTGCTGCATGAGCTGA820.10852015563378417No Hit
ACGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT760.10057965644106827No Hit
ATCTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA760.10057965644106827No Hit
CTGCCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA760.10057965644106827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)