FastQCFastQC Report
Sat 31 Dec 2022
SRR5843468.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843468.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36079
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA500.1385847723052191No Hit
GCCAGACTGCACCAAGAATTAGTATCTTTCACAGCCTTCACGTGCT480.13304138141301033No Hit
CCCACCAGGCTTCCCTGTCAAGATTGAGATTCCCCTCTTCCATGTG460.12749799052080157No Hit
CACTAGGGGGTGAAGGCCCTGGTGGTAGGCTGAGAACTTGACCTTT450.1247262950746972No Hit
TCTTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.12195459962859281No Hit
CTAAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.12195459962859281No Hit
CTAAGGGGACTGTACATTTTCAGAATCTTCAGAATTTGCAGCCTCA430.11918290418248842No Hit
CGAACAGGGACGGCATCCCTGTCTCCAATTTCACCTACAGCCCTGA430.11918290418248842No Hit
AATTCTGGGGGGCAGGCGCGTTGTCCTCTGTACATGGAAAAGAGCC430.11918290418248842No Hit
TACTACGGGGACACTTCTGATTCTGACAGACTCAGGAAGAAACCAT420.11641120873638405No Hit
TAATATGGGGGAGAACAAGCCAGTTCAGAGGACCCCAAAGTCTAGA410.11363951329027967No Hit
GCTTCAGGGGGGAGAAGGTGAAGATGGCTGCCGCCCGGGCTGCGGC400.11086781784417528No Hit
CTCTCGCGAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCC400.11086781784417528No Hit
AGCCTATCGCAGACGGTATCAACAGGAACATCCTCGTGTTAGATAT400.11086781784417528No Hit
CAGCGCGGGCCTTTTAAATGGGTCATTTATAAGTATAAAACTGTGC400.11086781784417528No Hit
GCGTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.11086781784417528No Hit
TCTTATGGGGCTCTTCCGGGGGACTTTCTGCAGGCTGGAATCTGAA400.11086781784417528No Hit
TAAGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.1080961223980709No Hit
CCAAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.1080961223980709No Hit
GCTACCGGGAGGATTAAACTCAGATGCAGATAAAATTCCATTTCAC390.1080961223980709No Hit
CATACTGGGACTTTTGACATCGATGCCAATGGCATCCTCAATGTTT390.1080961223980709No Hit
CACGCAAGACTAACAGCAGTACATATTATGTAATAATTAGGACAAA390.1080961223980709No Hit
CACCGAGGGGTAGGGTGTGCTAAAGTGTGCTGGCCACTGCTTGCAC390.1080961223980709No Hit
CACACAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA390.1080961223980709No Hit
CATCTTGGGGCAGAAGAAGGAGGTGGAGCATAGGTTGTCTGCACTG390.1080961223980709No Hit
GTCTCCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA380.1053244269519665No Hit
CTAAAGGGGGCCGCGGCCACTGGGCTCTCCGGAGGGAGCGAGTGGT380.1053244269519665No Hit
GCAAATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC380.1053244269519665No Hit
AATTCTGGGAGGTTCCACACAGGAACATCTTTCTTCTCCATCACTC380.1053244269519665No Hit
TCACAAGGGGGTCCCTAACTAAGCCTGACTGCTGCTGGCCAGGCTC380.1053244269519665No Hit
TGTCTAGGGGGCCCCCTTAATGAGCCTGCCCCCGCACCTGCGCAAG370.10255273150586214No Hit
CTTAATGGGGGGGGTGACGTCAGGCGCGCCGCTGCGGCTCAGTGGC370.10255273150586214No Hit
CGCCTAGGGGAGGCCAAGAAGCCGGTGGAAGTGAGGCTACCCAAGG370.10255273150586214No Hit
GCTTGAGGGGAGCTCCAGCACACTCTTGCCCCTTCCGCTGTGTTTG370.10255273150586214No Hit
TTCGTGGGATGCCACAACTAGATACATCAACATGATTTATCACAAT370.10255273150586214No Hit
TAGTATGGGGCGCACAAAAAGTATAAAATTATCAAGTGGAGATGAA370.10255273150586214No Hit
TGTTTAGGGGCTGCCTCTGCCTGCTGAGTGTCTGAAGCTTCACCCG370.10255273150586214No Hit
CACACTGGGGCGTCCGCAGTGATGAGCTACGACCGCGCCATCACCG370.10255273150586214No Hit
TCTTGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC370.10255273150586214No Hit
GGGCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.10255273150586214No Hit
CTTTAGGGGCCTCTAACGTTTTGGATGAGAAATTCGCTGATAATCT370.10255273150586214No Hit
ACCTTGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC370.10255273150586214No Hit
TCTTCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA370.10255273150586214No Hit
CGTAGCGGGGGGACATTCAAATGAGCATCCTAGTCACCGCGTTTAA370.10255273150586214No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)