FastQCFastQC Report
Sat 31 Dec 2022
SRR5843467.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843467.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34526
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.15350750159300236No Hit
TTAGCCGGGGACGTGATCGAGGTTTGCGGTGAAGGAGGAAGTGTTT500.14481839772924754No Hit
GCTTGAGGGGAGCTCCAGCACACTCTTGCCCCTTCCGCTGTGTTTG480.1390256618200776No Hit
ATCAATGGGAGGGGGCCTGTTCCTCGGACTCTGGTTACCTCTGAAG470.13612929386549266No Hit
CTAAGGGGACTGTACATTTTCAGAATCTTCAGAATTTGCAGCCTCA440.1274401900017378No Hit
ACCATTGGGATAGCTTGTAATTAAGAACGGAGAAAGAACAACAAAG440.1274401900017378No Hit
CGCTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.12454382204715288No Hit
GCCAGACTGCACCAAGAATTAGTATCTTTCACAGCCTTCACGTGCT420.12164745409256791No Hit
GTTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.12164745409256791No Hit
GCCAGTGGGGGGAATTCGAGCTCTTGATGATGATACTTAACCAAAC420.12164745409256791No Hit
CCATAGGGCCGAGATAGAGCCACTGCACTCCAGCCTGAGCTGGAGA420.12164745409256791No Hit
TCAAAAGGGATGATACACCATTGTCATCTACAAAGTTCACACTCAA400.11585471818339801No Hit
TCTGCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA400.11585471818339801No Hit
GCTCTAGGGGATAGAATGCGAAGGAACCGTTCCGAGCCCTGACAGG390.11295835022881308No Hit
TATACAGGGGCAGGCAAGGGCGGCTCTCGCTGGTCCTGGAGCTTGT390.11295835022881308No Hit
CAACCTGGGGACGTCCGGCCAGTCTGATGATCAGGAAGATGGCATG390.11295835022881308No Hit
TTACAAGGGGCTTCTTAAACCTGAAGTGGAGTACTACTCTGGTTGC380.11006198227422812No Hit
GGAACCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA370.10716561431964318No Hit
ACAACCGGGCTCCTCCGATGAAGCTGAACAAGGAGATGGTGGAAGG370.10716561431964318No Hit
TACATGGGGCTGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGA360.10426924636505822No Hit
CGCCTAGGGGAGGCCAAGAAGCCGGTGGAAGTGAGGCTACCCAAGG360.10426924636505822No Hit
CTCGGGGGAGTGCGCAGTGCCATGAAGGCCTCGGGCACGCTTCGGG360.10426924636505822No Hit
GTGCATGGGGTGTTCTTCAATAAGTAATCAAAATGTGGAGTATTGT360.10426924636505822No Hit
CATCAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC360.10426924636505822No Hit
TCAAGTGGGTGGTGTTTTGCGCTAAATATGTGGCTGCTATTTTATC350.10137287841047327No Hit
ACGCTGGGGGGGTGTTTACAGTGCTGCAAATTACACCAATGGGAGC350.10137287841047327No Hit
CTCTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA350.10137287841047327No Hit
CATGCAGGGGCCACAGAGGTGTTGGCTGCTGCAGACGGTCCCGGGT350.10137287841047327No Hit
CCGGCTGGGAAATAAGAGGCACTGTGGCCCTAGCGTAATATGGGTC350.10137287841047327No Hit
TCTCCGGGGTCTGTTCTGATTCTTTGGGCACCCAGAAGTTTATATT350.10137287841047327No Hit
GCTCCTGGGGGGAGCCGGAGGCGAGCGTGTCCAGTCCCAAGGCCGA350.10137287841047327No Hit
CAGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT350.10137287841047327No Hit
CAAGGAGGGGGCTTGTCAGATCAGGATCGTATTCTGCTTCTCTGGA350.10137287841047327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)