FastQCFastQC Report
Sat 31 Dec 2022
SRR5843448.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843448.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42844
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.13304079917841471No Hit
AACTCAGGGGCCAATATGGCGGTGTGCATCGCGGTGATCGCCAAGG560.13070675007002147No Hit
TGCCCCGGGGGCCGCGGTGGCTGGCGCTACTTCGGAGGAGCCCGAC490.1143684063112688No Hit
AACACGGGGGGAGGTACCAGCCATCTGGGCAGTACTTAAGCTGTGG480.11203435720287555No Hit
CTTCATGGGCAAGAAGGGTCACAGGAGAAGACCTTTCTGAAAGATT450.10503220987769582No Hit
GCGCATGGGGGCGCCCCTCCGTCATTGTCCTGAGTTGAGTGTCCTT440.10269816076930258No Hit
AAACCTGGGAGACGTTTCGGGATCCAGGCCCAGATGGTGACCACGG440.10269816076930258No Hit
CTTGTGGGGTCCAGACTCGGATGCACATCGAGCAGGACTTCAAGAA430.10036411166090935No Hit
CGCTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.10036411166090935No Hit
CTGCTTGGGGATACAAGCCATGTGCATTCTCCTCTACCCAGCTCTG430.10036411166090935No Hit
AGCACAGGGAAGGACGTGGCGTGGAGATGCTCGGCCTCTCGGCAGC430.10036411166090935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)