FastQCFastQC Report
Sat 31 Dec 2022
SRR5843447.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843447.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40677
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.13275315288738107No Hit
CTCTGTGGGTGGTCCACATCACACGAGCATGCAGCAGAGCTGGTCA530.1302947611672444No Hit
CTTGTGGGGTCCAGACTCGGATGCACATCGAGCAGGACTTCAAGAA470.11554441084642426No Hit
CTTACGGGGGGGCTATTTACAGCGGTTCTATCCACTGCAGTGCAGA420.10325245224574084No Hit
CTCCTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT420.10325245224574084No Hit
CAGCCTGGAGGGAGGTGGGGAGTCATGCCAAGGTGAAGAGTCTTTT410.10079406052560416No Hit
CATTTAGGGGGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGCA410.10079406052560416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)