FastQCFastQC Report
Sat 31 Dec 2022
SRR5843444.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843444.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40712
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.1375515818431912No Hit
TCGCGGGGTCGTAATTCACTAGGGATGGCGGTACCCGTGCCCGTCC530.13018274710159167No Hit
GCCACCGGGTACGCTGACGGCATTCAGAGTACGCTGATCGGCTTAT520.12772646885439182No Hit
GTAACTGGGGGGAATTCCGGACATTAATTAGGGCTGAAAGCCCTAA510.125270190607192No Hit
GAACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC500.12281391235999213No Hit
TTCACTGGGGAGAGGAGAGGCAGATGTCACGGACACGAGGACGGTA490.12035763411279231No Hit
GTTGGTGGGGACATTTCCTCCAACCATCCGGCCAAGTCCACATAGC480.11790135586559244No Hit
TTATGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.11544507761839262No Hit
ACTAGTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.11544507761839262No Hit
ACAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT460.11298879937119276No Hit
AGCGCTGGGGACCCTGAGAAAGCCAGAGCCGGTTTGCAGGCAACGC460.11298879937119276No Hit
GTCTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.11298879937119276No Hit
AACTTTGGGATAGAAAATTGTATTATGCATGCCGTTGCATTCGCTG460.11298879937119276No Hit
TGCTTCGGGGGTGCCTGCAACCTTGTCTGAGAGGAACCCTTCTCTG460.11298879937119276No Hit
GCTCATGGGGATGGCAGCCCCACATGCACGCTTTGATGATGGCGTT460.11298879937119276No Hit
CCAGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.11053252112399294No Hit
CATATAGGGGGGAATTCATTTGATCGTAACTCGGGTGACCAATGAC450.11053252112399294No Hit
CAAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC450.11053252112399294No Hit
TAGAGCGGGGGTTAACGGTGCCCACCCAGTTAGGATGTGGCTCTGG450.11053252112399294No Hit
ATATTGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGCCC450.11053252112399294No Hit
GCACAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT440.10807624287679307No Hit
CGCTTTGGGGGCTGCGCCTGGTCTGGCAGGCACCATGTGTGCATCC440.10807624287679307No Hit
CGAGCTGGGGCTGCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT440.10807624287679307No Hit
GATACTGGGTGCCAAGCGAGCGTGGTGTGGTGCCCCCGACCTACAA430.10561996462959325No Hit
CGACCCGGGGGGACACGAGGACGGTAGCTTCGAGCAGCCCAAACCC430.10561996462959325No Hit
CATTAAGGGACTGTGCCTGCAACCTTGTCTGAGAGGAACCCTTCTC430.10561996462959325No Hit
GCCACCGGGCGATCTAGACGTGGGGGCCATTACTGCCGGAAAAGGT430.10561996462959325No Hit
GTAACTGGGAGGGTTCAGGAGGGGTGAGTCAGAATTCAGCCGACTT430.10561996462959325No Hit
GGTCATGGGAGTTTTCTATCTTTTTTCAAGGACAGAAGTCTCTACT420.10316368638239339No Hit
CGCTTAGGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCC420.10316368638239339No Hit
CTTCAGGGGGGCTCAGGCCTACTCTGGGTGTGTTCCAGGCAGCTCT420.10316368638239339No Hit
GCCTGTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCT420.10316368638239339No Hit
AGCCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.10316368638239339No Hit
CATTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.10316368638239339No Hit
GTCTCTGGGAGGGGGGAGTGGCCAGGCGGCTGGTTGTGGGCCAAGT420.10316368638239339No Hit
ACTTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.10070740813519355No Hit
TGCTCCGGGGGCTCCACAGAGAGCTGTAACACCACTACAGAAGACG410.10070740813519355No Hit
CAGACTGGGGACTGCCGGAAAAGGTCCAGCAGAGCTCAGCAGCCAA410.10070740813519355No Hit
TTACTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.10070740813519355No Hit
AAGCCCGGGGGGGGCATCACAGGTGTTTGGGAAGCGCTCTGCCCGG410.10070740813519355No Hit
CTTGCTGGGGATATGGAAGGTGATTACGTTTCCTCTGGAGGTGGAT410.10070740813519355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)