FastQCFastQC Report
Sat 31 Dec 2022
SRR5843440.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843440.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38028
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAATCGGGGTCTTCTGTGTACTGGAATACACACACACACACACAC870.22877879457242034No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG700.184074892184706No Hit
TACTGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC620.16303776164931102No Hit
CAACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.16040812033238666No Hit
CTTATTGGGGACTACAGTGATGAGGACAACAAGCCCCTGCAGGGCA600.1577784790154623No Hit
TCTCGGGGGACTGCCTGGGATATTTTAACAGCTCGAAATGGCTCCC580.15251919638161357No Hit
CAACACGGGAAGATGAATCAGGTGGTAAAATGGCCGTGGTACAAGC570.14988955506468918No Hit
ATTCGTGGGAAGATGCAACAGCCTCTGTGTAAAGACATCAATCACA540.14200063111391606No Hit
CCCATTGGGATAGGATTTTAAGTGAAAGCTTTTCTTCCTGGTTTGC540.14200063111391606No Hit
TTCCGTGGGGGATACTCTGCTATGCTTGTAGACAGGAACCTAACAT530.1393709897969917No Hit
TTGCTGGGAATAAAAGGGCTGGGTCATTGGGCCTGCAGCAGCATCT530.1393709897969917No Hit
AATAACGGGACTCTTAGGGAGGAGGTATGGATTTTGAGTGCTGTTG530.1393709897969917No Hit
GCCACAGGGATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGTC520.1367413484800673No Hit
GGCCATGGTTACCATGTGTGCTCCTGAAAACAGATCCCCTGCTGGA520.1367413484800673No Hit
AACCGGGGGTTTCAGTGCTAGTGTAGGACAGGCAGAGGTGACCAGC510.13411170716314294No Hit
CTAGGGGGGAAAAATAACCATTCCCTGCCTCCTAGAAAGGACTCAT510.13411170716314294No Hit
CTCAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.13411170716314294No Hit
CAATTAGGGGCCGGCAGTTCCAGGAGCTCAATGAGCTGGCCGAGTT510.13411170716314294No Hit
TTCGCAGGGCCCCATCACAGATGTCACATGTGTGCTAGTCCAGAAA510.13411170716314294No Hit
GTTACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC500.13148206584621858No Hit
GAGCATGGGGTCACTCAGCATGTTTCAGATGACAGTTGACCACAGG500.13148206584621858No Hit
CCAACAGGAAGCTCTGGGTGAACAGCATTGTGCCAGACAACTAAGA500.13148206584621858No Hit
ACCTCAGGGCTTCCTTACTTTCTTCTCCTTTCCTGACAGAGCAGCC500.13148206584621858No Hit
TTTCGCGGGGAATGAACTTTTCTGCTCCTCCCGTTTGAATTAACTT490.1288524245292942No Hit
AACACTGGGAGCTGCCGCTCCATCAGTGGCTCCACGTACACACCCT490.1288524245292942No Hit
GCTAACGGGCGATCTACGAACGGGAGAAGGAAACCATTTTTTTTTT490.1288524245292942No Hit
GATGGTGGGGATTATAACAACGGTGCAATCTCAGCTAAACCGACGC480.12622278321236985No Hit
TATGACCGGGGGCGCAGCGGCTGGGCAAGCGCGTGCTGAGCAAGCT480.12622278321236985No Hit
GACATTGGGGCATGTGAATGCTTTTTTTTCATTCAGAATAACTAGC480.12622278321236985No Hit
CGAACTGGGTGAAGGAACCTACCAAGGCCACCACACTCCTATTGTA480.12622278321236985No Hit
CATTAGGGGGAGTAGCCGCGCTGGTGCCACACGACTACAACCCTCG480.12622278321236985No Hit
CAACCTGGGACCACTGTGAGAGGACAGATGTGGACTGAGAGTTTTC470.12359314189544547No Hit
GCAGCCGGGAATGGACTAAACTAAAAACTGAGCAAAACTGAGCTTT470.12359314189544547No Hit
ATTTAAGGGGACGCCTCCTGAAGTGGACCGAAAGAAATGCAAAATC470.12359314189544547No Hit
ACTCCAGGGAGCTAGAGGCCCCTCGTGGGCCCCTTTTCATGTCCTG470.12359314189544547No Hit
AACAATGGGAAACCAAAGTGTGTCCTGTCTTGTCTGTCTCTCACCC470.12359314189544547No Hit
GGTTACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA470.12359314189544547No Hit
ATCGACGGGAAATGGCAGATATTTTAATGGGCTACAATTTATAAAT470.12359314189544547No Hit
CTTGCGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA460.1209635005785211No Hit
ATCTAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA460.1209635005785211No Hit
GGTGTGGGGGTAGTTCCATGATGGCGTCGGCGGTGCTGTCAGCGTC460.1209635005785211No Hit
CTGTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.1183338592615967No Hit
AAACAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.1183338592615967No Hit
GCACGGGGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGA450.1183338592615967No Hit
GTTTATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC450.1183338592615967No Hit
TATTGGGGGATCGATGTAAGATTTTCATACCTTCCTACTCCTTTGA450.1183338592615967No Hit
CGATTAGGGGAATATTATAGTTATATCTTGAATGAGTTCCTCAAAA450.1183338592615967No Hit
TCGCCAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC450.1183338592615967No Hit
TAAAATGGGAGGGGAAAAAAGACAGTGAGCAGAGTTTCATCAGTAT450.1183338592615967No Hit
ATAGTCGGGACCTTCCTCAGGAAAAACCAGTGTGAGACCAAGATCA450.1183338592615967No Hit
ATATTGGGGGGCTGCTTCGTGTCGGCACGAAGTGTCTTCCGATGCA450.1183338592615967No Hit
ACCTCGGCACGGGAAGCCAGTAAATGGCTCCAGCTCCAGGTCCTGC450.1183338592615967No Hit
CTTCAAGGGACCCCGGCATGCACTCAATAGCCGCAGTGTAATGATC440.11570421794467234No Hit
ACTTTAGGGACGGCCGATTGTCGCAGCCCGGGTCGATTATAACAAC440.11570421794467234No Hit
GTAACCGGGATGTTAGTTCTCTGTCCCATGAAGAGGGCCGTGGTGA440.11570421794467234No Hit
ACCAAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC440.11570421794467234No Hit
TTACCCGGGATAGCGAGTGATGAGCTGATCCTTTCCCCTAAGAGAC440.11570421794467234No Hit
GACCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.11570421794467234No Hit
CAAATCGGGATAACTAGTGGGAAGCAGGGAATTTCAAGAGATGATG440.11570421794467234No Hit
CCTTAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.11570421794467234No Hit
ACAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.11570421794467234No Hit
CTGATAGGGGCAGTTGGGACAGCTGAAGCCATCTTTACCAATTTAA430.11307457662774797No Hit
CCCAAAGGGAGCTGCCGGCAAGTTTGACCGAGAATTGTACTTGATA430.11307457662774797No Hit
GACAATGGGGCAACATTAACTCTGTCCACGAGCTTTGCTGGTGCAT430.11307457662774797No Hit
CGACCTGGGAGTGATGTCAAGAGTGTCCTAGGGGATAGCCCTCTGG430.11307457662774797No Hit
TTACACGGGACCTGTCCCGCGTGCTGCTTTTCCTGTCCCAGTGCTA430.11307457662774797No Hit
ATCACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC430.11307457662774797No Hit
TCACATCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.11307457662774797No Hit
TAGGTTGGGGGAGATGGCGCCAAGCTGGTCCGTGATGCTTTTGCCC430.11307457662774797No Hit
TGCGTGGGGGTCCTGTGTCTCAGGGTGGTCCTAGCTTCTCCTTAGG430.11307457662774797No Hit
TTTTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.11307457662774797No Hit
TCTGTTGGGGGGACTCTTACAGCTGTGGGGTTTTAGTTTGGTTTTT420.1104449353108236No Hit
GCTAATGGGAGGAATAGTATGAGCAATAATGTCTATTGGCTTTCTA420.1104449353108236No Hit
AAGCTAGGGGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGC420.1104449353108236No Hit
GCACACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.1104449353108236No Hit
CTCTTAGGGCTAGGAAATTTTATTTTAAATCTTGGTAAACTGAAGA420.1104449353108236No Hit
GTTAACAAGGGATTCAAAGATATTTGCCAAGTCTGTGGCTGTGTTG420.1104449353108236No Hit
CGTCCAGGGATGTCCACCATCAATAATTTATATGGGGTTAAAATGT420.1104449353108236No Hit
AACAACGGGACCCGACAGGGATGGGTCTGACCCCTACCAGGAGCCC420.1104449353108236No Hit
TTACCAGGGGGAGTTCAACAATGCTATCAGCTATGTGAACAAGATC420.1104449353108236No Hit
TGACTTGGGGTATGCCACAACTAGATACATCAACATGATTTATCAC420.1104449353108236No Hit
CACCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.1104449353108236No Hit
TCTTTGGGGTGCATACAAATGGTCATTTGTGTGCAATACATTAACT420.1104449353108236No Hit
TTAAATGGGGCCTGTGGATAATCCCGTTTGCTTTCTTCGTGTCACT420.1104449353108236No Hit
CACCATGGGATAGCCCTTGGGAAGGCTTGGGCTATTTACTGGGCGG420.1104449353108236No Hit
CTTCATGGGGGCACTTCTTGCGTTTTAAGCGGGAAAGATCGCGAGG420.1104449353108236No Hit
GTTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA420.1104449353108236No Hit
CCAACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.10781529399389923No Hit
ACTGCGGGGAGCATAGTTCTTTTTGAAAACAAGAAAGAGAAACTGG410.10781529399389923No Hit
ACTATAGGGCAGGGCCGCTGGTATTTGCTGTAAAGAGGGGCGTTGA410.10781529399389923No Hit
ATGCCTGGGGTTCCACCTGAACTCATAGCTGAGATGCCAAGGGTTG410.10781529399389923No Hit
TATGTGGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC410.10781529399389923No Hit
TTACAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.10781529399389923No Hit
CTTCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.10781529399389923No Hit
ACAAATGGGGAATTATTTCACATGTAGTTACTTACTACTCCGGAAA410.10781529399389923No Hit
TGTGTTGGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGC410.10781529399389923No Hit
AAATAAGGGAAGATGAAGAAAGGCAACACGATGCAGCAGTTCCTAC410.10781529399389923No Hit
AACTGCGGGGGTTTTGCTGCTTAAAACCCCCGTATTGTGAGAAGAG410.10781529399389923No Hit
ACTTGGGGCTGCCAGTGGGGGGAATTCTGGACATTAATTAGGGCTG410.10781529399389923No Hit
TTTATGGGGTAACTGCGCAGTTAGGGCAGCGTCTGAGGAAGTTTGC410.10781529399389923No Hit
TTTCGCGGGAAATAAATAAATAAGAAAAGAAAAGAGTTGTAGTTTT410.10781529399389923No Hit
TCGCAGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC410.10781529399389923No Hit
TTCACAGGGGAAGGAGTTGACCAGCCAACCGACTCTGCATTCATCT400.10518565267697486No Hit
TGCCATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA400.10518565267697486No Hit
GCTCTGGGGAACTTTTTAGGAGTCTATAAAATAACTACCAGTTCCT400.10518565267697486No Hit
CTTATGGGGGGGGTCCCTCAGATTGAGGTTACTTTTGACATCGATG400.10518565267697486No Hit
ATAGGTGGACAGTTGAAATAGGAATTACATTAAAACAGTAGGAAGA400.10518565267697486No Hit
CATCAAGGGGAACTCGGATAGGTCTCAGAAAAACGAAATATAGGCT400.10518565267697486No Hit
TGTGTTGGGAAGGGACATAACTTGGGACTCAAAGGGATTGTTTCGC400.10518565267697486No Hit
TGTGCAGGGATCTGAACACAGTCATCCCTTATGAGAAGAAATCCTC400.10518565267697486No Hit
GATGTTGGGGAGCATTTCAAAGGTCTGCATAGAAAGGAACAGCCAC400.10518565267697486No Hit
GCAGCAGGGATACGAAGATTTCCCTCTCTTAGCAGTAGCCACACCT400.10518565267697486No Hit
GCTCTAGGGAGGGAGAGGAAGTCCCCAAAATGCTTGGGACATGACC400.10518565267697486No Hit
ACGCCTGGGAAGGAACTGCTTCAGAAGTTCATTTCTGTGTCTGTGG400.10518565267697486No Hit
TTGAGTGGGAGCGTGGTCTCCCCTCAGGACACTGTACAGCGATGCC400.10518565267697486No Hit
CGTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.10518565267697486No Hit
TCTATGGGGCGATCTGCACCGGGGACTCCACGTCCATCGACATGTG400.10518565267697486No Hit
GCAAATGGGGGAGTCCGAAGCCATGGTGATGGGTGTCCTGAACCAA400.10518565267697486No Hit
AGAACTGGGATTGCTGTGCTAATCATTGTTTTTATTCTTTGGGACC400.10518565267697486No Hit
CACATGGGGAGTGCAGCAGAGCTTCGCCATGTGATGACAAACCTTG400.10518565267697486No Hit
CTCAATAGGGGATTCTTTGAGCATAGTTCTTTTTGAAAACAAGAAA400.10518565267697486No Hit
TTTAGAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC400.10518565267697486No Hit
TTCGACGGGATGCAGCTTTAAGCTTATAAAGGTAGACAGGCAAGAT390.10255601136005049No Hit
TTACGAGGGTACCTGCGGCTGCTTGTCAAGCTGTACAGGTTTCTGG390.10255601136005049No Hit
AGCTTGTCCCTCTTGTACCCATCCACCCCCGGCAAAAGCTTCTATA390.10255601136005049No Hit
CTCTATGGGAAGAAAAACGGTGTGCTTCAAATTGCGCTTGTCGGCT390.10255601136005049No Hit
TTTTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10255601136005049No Hit
TACTCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10255601136005049No Hit
CCATTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10255601136005049No Hit
AAAGAAGGGGGGCTTGTTCATGTGGATGTAGTGATTGCCTGGGACT390.10255601136005049No Hit
CTAGAAGGGGGAACTGGCGCGAGCTTGGCGACTAGGACCTTGTGCA390.10255601136005049No Hit
AATATTGGGGAACTATAGAACATCAACTCTGCAAATGGTGGATATT390.10255601136005049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)