FastQCFastQC Report
Sat 31 Dec 2022
SRR5843439.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843439.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36485
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAATCGGGGTCTTCTGTGTACTGGAATACACACACACACACACAC910.2494175688639167No Hit
CAACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA770.2110456351925449No Hit
GCACGGGGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGA620.1699328491160751No Hit
GGCCATGGTTACCATGTGTGCTCCTGAAAACAGATCCCCTGCTGGA570.15622858709058515No Hit
GCCACAGGGATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGTC550.15074688228038918No Hit
TCTATGGGGCGATCTGCACCGGGGACTCCACGTCCATCGACATGTG550.15074688228038918No Hit
AATATTGGGGAACTATAGAACATCAACTCTGCAAATGGTGGATATT550.15074688228038918No Hit
ATAGGTGGACAGTTGAAATAGGAATTACATTAAAACAGTAGGAAGA530.14526517747019324No Hit
CTCAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.14526517747019324No Hit
TATTGGGGGATCGATGTAAGATTTTCATACCTTCCTACTCCTTTGA520.14252432506509524No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG510.13978347265999727No Hit
GAGCATGGGGTCACTCAGCATGTTTCAGATGACAGTTGACCACAGG490.1343017678498013No Hit
TTGCTGGGAATAAAAGGGCTGGGTCATTGGGCCTGCAGCAGCATCT490.1343017678498013No Hit
TACTGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC490.1343017678498013No Hit
CCAACAGGAAGCTCTGGGTGAACAGCATTGTGCCAGACAACTAAGA490.1343017678498013No Hit
CAACATGGGACCTTCCTCAGGAAAAACCAGTGTGAGACCAAGATCA480.1315609154447033No Hit
TATGACCGGGGGCGCAGCGGCTGGGCAAGCGCGTGCTGAGCAAGCT480.1315609154447033No Hit
TTACCCGGGATAGCGAGTGATGAGCTGATCCTTTCCCCTAAGAGAC480.1315609154447033No Hit
TGCGTGGGGGTCCTGTGTCTCAGGGTGGTCCTAGCTTCTCCTTAGG480.1315609154447033No Hit
TACGCAGGGATTGGCAATTGCTGGAGAAGATTTTTCCATCGTCGCT480.1315609154447033No Hit
ATCACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.12882006303960533No Hit
AGCTTGTCCCTCTTGTACCCATCCACCCCCGGCAAAAGCTTCTATA470.12882006303960533No Hit
GTGGAGGGATTATAAATGGTTGTGAGCCACCATGTGGTTGCTGGGA470.12882006303960533No Hit
TTTTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.12882006303960533No Hit
TTAAATGGGGCCTGTGGATAATCCCGTTTGCTTTCTTCGTGTCACT470.12882006303960533No Hit
GTAATGGGATTGAACAGGATGTTAATGAGAACACACTGAAGAACTT460.12607921063450733No Hit
CAACACGGGAAGATGAATCAGGTGGTAAAATGGCCGTGGTACAAGC460.12607921063450733No Hit
TTTGCAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT460.12607921063450733No Hit
CTTGCGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA460.12607921063450733No Hit
GATGGTGGGGATTATAACAACGGTGCAATCTCAGCTAAACCGACGC450.12333835822940933No Hit
TCGTAGGGGGAGACACCTTGGCCGCTCTTTGGGGCTTTATGGGAAA450.12333835822940933No Hit
TTTCGCGGGGAATGAACTTTTCTGCTCCTCCCGTTTGAATTAACTT450.12333835822940933No Hit
TAAGTTGGGGTCCCAAGCAATCATGCCAGCACCTTATTCAACACAC450.12333835822940933No Hit
ATTACCGGGGGCTCATTTCAGCCACCAGACATGTAGGATTTGTGGA450.12333835822940933No Hit
TTCGCAGGGCCCCATCACAGATGTCACATGTGTGCTAGTCCAGAAA450.12333835822940933No Hit
TCACTTGGGGATCCCAAGTGACCTTGTTGACACCAGCTGCAGACGT450.12333835822940933No Hit
GCTAACGGGCGATCTACGAACGGGAGAAGGAAACCATTTTTTTTTT450.12333835822940933No Hit
CGACCTGGGAGTGATGTCAAGAGTGTCCTAGGGGATAGCCCTCTGG440.12059750582431136No Hit
GCCACGGGGAGGACTTAACCAAACACAAATACGAAAAATTATAGCC440.12059750582431136No Hit
GTAACCGGGATGTTAGTTCTCTGTCCCATGAAGAGGGCCGTGGTGA440.12059750582431136No Hit
TACTCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.12059750582431136No Hit
AAAGGCAGGGATTAAATCAGATCAGAAAGCTGAGAGCAAATAATGA440.12059750582431136No Hit
ATTGCCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC430.11785665341921336No Hit
TAGTGCGGGGAGGCCCCCTCTTGGTACCACCTAATTCTGGTCTCTC430.11785665341921336No Hit
ACTATAGGGATTAAAAACCAGGGAGGGTGGGTGTAGCACCCGTAGC430.11785665341921336No Hit
CAACCTGGGACCACTGTGAGAGGACAGATGTGGACTGAGAGTTTTC430.11785665341921336No Hit
GTTAACAAGGGATTCAAAGATATTTGCCAAGTCTGTGGCTGTGTTG430.11785665341921336No Hit
GCTCTAGGGAGGGAGAGGAAGTCCCCAAAATGCTTGGGACATGACC430.11785665341921336No Hit
ATATTGGGGGGCTGCTTCGTGTCGGCACGAAGTGTCTTCCGATGCA430.11785665341921336No Hit
TGCATCGGGACACGCTCTCAGGTTCCCTTTGAAGTGAGAGATGGTT430.11785665341921336No Hit
AATAACGGGACTCTTAGGGAGGAGGTATGGATTTTGAGTGCTGTTG430.11785665341921336No Hit
CTTGCAGGGCACCTGCCTTCAGGGCTGGACTGAGGCCTGAACACCC430.11785665341921336No Hit
GTTAACGGGAACACCACCATAACCTTAAACATGGGCTTGTGCTGGA420.1151158010141154No Hit
ACATCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC420.1151158010141154No Hit
CCTCAAGGGGACCGGCAAGATGGCGGCGGCGCTGACCTTCCGCCGG420.1151158010141154No Hit
ATCATAGGGGAGACGTCATGGTTAGCATTATTACACTCGTTGCTGT420.1151158010141154No Hit
ACTCCAGGGAGCTAGAGGCCCCTCGTGGGCCCCTTTTCATGTCCTG420.1151158010141154No Hit
CAGCACGGGGACGAAGGGACGTCGCGTCGCCGCGCCGGGTCTCGAG420.1151158010141154No Hit
ATAGCAGGGGAATATTATCTTAAACACATTAAACTAATGTTATAAG420.1151158010141154No Hit
ACACCAGGGAAGCTACCCTTCTTGCTAATCCTTCTTCAGCTCTGAG410.11237494860901741No Hit
GGCTCGGGGGTACTCCAGAGGTGCCCTTGGTGGGAGGACCAGTGGT410.11237494860901741No Hit
ATTTAAGGGGACGCCTCCTGAAGTGGACCGAAAGAAATGCAAAATC410.11237494860901741No Hit
TTCATGGGGGTGTGCACCAAGATGTTCTACCAGAGAACAACAAGAC410.11237494860901741No Hit
CTAGAAGGGGGAACTGGCGCGAGCTTGGCGACTAGGACCTTGTGCA410.11237494860901741No Hit
TCTCGGGGGACTGCCTGGGATATTTTAACAGCTCGAAATGGCTCCC410.11237494860901741No Hit
TGACCTGGGGTGATACACGTTTCTGGAAACTGCCTCGTCATGCGAC410.11237494860901741No Hit
GCAAATGGGGGAGTCCGAAGCCATGGTGATGGGTGTCCTGAACCAA410.11237494860901741No Hit
GTGGATGGGGGCAAAATAGATTTCATTGTTAACAGAACTAGCTTCA410.11237494860901741No Hit
TGCTTAGGGGTTGCTCTGACAAAAACATATGTATTTCTTTCTTGTA400.10963409620391941No Hit
AACCGGGGGTTTCAGTGCTAGTGTAGGACAGGCAGAGGTGACCAGC400.10963409620391941No Hit
TGCGAAGGGACCTTCCTCAGGAAAAACCAGTGTGAGACCAAGATCA400.10963409620391941No Hit
TAACGCGGGGCAGTAAGGAATTGTAATTTTAGGAAGGTAGAAAAAC400.10963409620391941No Hit
CATAAAGGGAACCTCGGTGGAAAAATAACCATTCCCTGCCTCCTAG400.10963409620391941No Hit
TTACAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.10963409620391941No Hit
CTCCTTGGGGGAAAAGTCTTCATTGCCCAGCTACCTTGGCATCCCC400.10963409620391941No Hit
CGCTTGGGGAAGCTGATAGAGAACAAGATGAGTGACAGCAAGAAAG400.10963409620391941No Hit
GACATTGGGGCATGTGAATGCTTTTTTTTCATTCAGAATAACTAGC400.10963409620391941No Hit
TCTGCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA400.10963409620391941No Hit
TAAAATGGGGGTGAAGGAAGACGCCTTCTACAGCTGGGAGAGCAGC400.10963409620391941No Hit
AAACTAGGGATAGTGTGGCTGAACAGGATGCAATCTTTTGTCTAAA400.10963409620391941No Hit
ACCACTGGGACTGGTGTGGGAGCGACGCTAGAGAAGAGATGGAAGT400.10963409620391941No Hit
ATGTACGGGAGCTGGCCACTGGTGACTACCTATTTGAGCCCCACTC400.10963409620391941No Hit
AAGCTAGGGGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGC390.10689324379882144No Hit
CTTCTCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA390.10689324379882144No Hit
ATGCCTGGGGTTCCACCTGAACTCATAGCTGAGATGCCAAGGGTTG390.10689324379882144No Hit
TATGTGGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC390.10689324379882144No Hit
CTTCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10689324379882144No Hit
TCGCCAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC390.10689324379882144No Hit
ACCAAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC390.10689324379882144No Hit
ACTAGGAGGGGTTCTCCAAAGCTAGATACACTGTCAGGTCCTTTGG390.10689324379882144No Hit
AAAGAAGGGGGGCTTGTTCATGTGGATGTAGTGATTGCCTGGGACT390.10689324379882144No Hit
CCCATTGGGATAGGATTTTAAGTGAAAGCTTTTCTTCCTGGTTTGC390.10689324379882144No Hit
ATGCCTGGGATTTCCAAAGGGTCTTGGTGAAGAAATATGCGTCAGA390.10689324379882144No Hit
AACGGGGATTACCATGAACCTCCACCTCAGCAATGGTCCTTTTACC390.10689324379882144No Hit
CATTAGGGGGAGTAGCCGCGCTGGTGCCACACGACTACAACCCTCG390.10689324379882144No Hit
TTTTGAGGGGTTAGGGCAGCGTCTGAGGAAGTTTGCTGCGGTTTCG390.10689324379882144No Hit
TTCACTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA390.10689324379882144No Hit
GGCCTAGGGAGTGGAATAAACCACGTGGGGAAATCATCTATTTTGA390.10689324379882144No Hit
TTCGTGGGGGCCTGACTCTGGAAAAATGCTGAAGAGAAGGACTAAG380.10415239139372344No Hit
TTAACAGGGGTCCCTGGCAGGGGAGGTGAGAATTGTAGATGACCAG380.10415239139372344No Hit
CATCAAGGGGAACTCGGATAGGTCTCAGAAAAACGAAATATAGGCT380.10415239139372344No Hit
CTAGGGGGGAAAAATAACCATTCCCTGCCTCCTAGAAAGGACTCAT380.10415239139372344No Hit
TAAAATGGGAGGGGAAAAAAGACAGTGAGCAGAGTTTCATCAGTAT380.10415239139372344No Hit
CACAATGGGGTGAGACCAAGATCATGGTACTGCAGCCTGCGGGGGC380.10415239139372344No Hit
AAAGTAGGGGTTCTCAAAGATGAAATGCTCTGATTGGTCAGACTGT380.10415239139372344No Hit
AACTGCGGGGGTTTTGCTGCTTAAAACCCCCGTATTGTGAGAAGAG380.10415239139372344No Hit
CAGGATGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA380.10415239139372344No Hit
ATACTTGGGGACTTGCAACCCTACACGGAGGTAATATTAAATGATC380.10415239139372344No Hit
AGCTCAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG370.10141153898862547No Hit
GCATCGGGGCATACAGTCATAAACTCTTCTCTTCCATATGACTATC370.10141153898862547No Hit
CTGTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.10141153898862547No Hit
ATTCATGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT370.10141153898862547No Hit
GTTTATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC370.10141153898862547No Hit
TTACAAGGGGTCACCGAGTTCTTTATCAGCCTAAGGCCTGCACCTC370.10141153898862547No Hit
CAATCCGGGGATTTCTTCTGTGCTTTTCTGAGTAAGTCTTTGATTT370.10141153898862547No Hit
TGTGTTGGGAAGGGACATAACTTGGGACTCAAAGGGATTGTTTCGC370.10141153898862547No Hit
ACTTTAGGGACGGCCGATTGTCGCAGCCCGGGTCGATTATAACAAC370.10141153898862547No Hit
CCACAGGGGATCTGGTGGAGATCCAGTGTCCTGAGCAAGTGGTGGG370.10141153898862547No Hit
CTTTACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC370.10141153898862547No Hit
ACACGAGGGGAACTGGACTTGGCCATCTTTCCACACCCTGGGGAAG370.10141153898862547No Hit
TGTCCAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA370.10141153898862547No Hit
GGTGTGGGGGTAGTTCCATGATGGCGTCGGCGGTGCTGTCAGCGTC370.10141153898862547No Hit
CGTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.10141153898862547No Hit
AACACTGGGAGCTGCCGCTCCATCAGTGGCTCCACGTACACACCCT370.10141153898862547No Hit
CTTATTGGGGACTACAGTGATGAGGACAACAAGCCCCTGCAGGGCA370.10141153898862547No Hit
TATGCAGGGGGTTGTTTAGTTGAGGCACTTTATAATTTTCTCTACT370.10141153898862547No Hit
TAACGTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC370.10141153898862547No Hit
TTTATGGGGTAACTGCGCAGTTAGGGCAGCGTCTGAGGAAGTTTGC370.10141153898862547No Hit
ACCTCAGGGCTTCCTTACTTTCTTCTCCTTTCCTGACAGAGCAGCC370.10141153898862547No Hit
TGCACTGGGACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGC370.10141153898862547No Hit
TTTTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.10141153898862547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)