FastQCFastQC Report
Sat 31 Dec 2022
SRR5843436.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843436.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33841
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAACTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA500.14774977098785497No Hit
TTCTACGGGGGTGTAGCCTCAGTGGCTGAGAAAACCAAGGAGCAGG460.13592978930882657No Hit
GGCAGTGGGACGCATAGAGGGGGGCGGAGCCGGAGTCCGGGAGTGC450.13297479388906946No Hit
CCCTATGGGGCTTTTCCGGTCGGCGTGTTTCTGGATCGGAGCGTCT440.1300197984693124No Hit
CTAGATGGGCTCTTGGAACGCTGTGCTCAGTATAAGAAGGACGGTG440.1300197984693124No Hit
GCGCGGGTAGGATATTGTGAGTAATATAGATTGGCGCTAGTAGATC430.12706480304955528No Hit
CGCTTTGGGGAAGGGAGGTAATAATGAATGGATATGATAAAATCTA430.12706480304955528No Hit
TCAAGGGGCAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT420.12410980762979817No Hit
AACACTGGGGAAGAAGGGCTATGAAGTCATTTATCTCACAGAGCCT420.12410980762979817No Hit
TTCACTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA420.12410980762979817No Hit
ATACTCGGGGACGGCTGTGCAGAAAGCAGCTTGTTTCTGCACTGTG410.12115481221004107No Hit
CACGTGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA410.12115481221004107No Hit
TAAATAGGGCGATCTTCAAAAGGGGGTGGAGGTCAGAGTGAAAGCA400.11819981679028398No Hit
ACCAAGGGGATACTACTAACAGACCGCAACCTAAACACAACTTTCT390.11524482137052687No Hit
TCTGTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT390.11524482137052687No Hit
AAGTCAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA390.11524482137052687No Hit
GCGAAAGGGCGATCTATTAGCGGGATATCACAAGTGTTTAACCGCC390.11524482137052687No Hit
ACCCTGGGGTTTCAGGCCAGCCAGGACTACATAACAAAACCCTGTT390.11524482137052687No Hit
CAAACAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA390.11524482137052687No Hit
TTTTGAGGGAGAGATAGAGATAGAGATAGACCAGAGGTTGACATCA380.11228982595076976No Hit
TTTTGTGGGATTGTCTCACTTGGGACAAAGTCTGGTGAGGAATCCT380.11228982595076976No Hit
ATCCACGGGGAGCCTCAATATTTTTTATTTGCTTATTCCTTCATGT380.11228982595076976No Hit
CCTACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC380.11228982595076976No Hit
AGTCAAGGGGACCGCTAGAAGCTGCTGGCGGAGGACAAGGAGAACT380.11228982595076976No Hit
TCGCAGGGAAACTCATGCATATCACATAGTTAATCCAAGTCCATGA370.10933483053101269No Hit
TCCACTGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG370.10933483053101269No Hit
TGACTGGGGACTGAGGGAATCATTAAGGCTGGACATGTTACAAAGT360.10637983511125558No Hit
ACGTAGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC360.10637983511125558No Hit
CTATATGGGGGAAGTTTGAAGCTTAAGAGACTCTGAGGGAGCTGCT360.10637983511125558No Hit
AGATACGGGGAGAATGAACTGTGATGGATACAGGAAGAGACAGAAT360.10637983511125558No Hit
GTTTTTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA360.10637983511125558No Hit
TCGCTCGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG360.10637983511125558No Hit
CCGCTTGGGGAGCTGCAGGACGCTGCGGAGTTGCAGGGCTCCGCGC360.10637983511125558No Hit
AAATGCGGGTGCCCAGTGTTGATTGGCCAGCCGGGAACAGCGCGAT360.10637983511125558No Hit
CCAACAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG360.10637983511125558No Hit
ATCCCAGGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGA360.10637983511125558No Hit
CCCTTCGGGACTGTCACAACGGCGGCCAGTGCTACCTGGTGGAGAA360.10637983511125558No Hit
TGCCATGGGGCTGCAATGAAATGTGGGCTCACGAAGCAGCTACTGG350.10342483969149847No Hit
CTATCCGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT350.10342483969149847No Hit
CCTGTAGGGACTTCGGTCTCAGCCTGAATCTGCTGGGCTAAGGGAT350.10342483969149847No Hit
ATGAATGGGACTTATTACAGCCGTACTGCTCCTATTATCACTACCA350.10342483969149847No Hit
AGCAACGGGGAAGAGGGCCTGAAATTTGAAGCATGGAAAAAAAAAA350.10342483969149847No Hit
GGATCTTTGGTGAGCGGCTGCATGACCAGGAGAGAGGCTGGTTCCC340.10046984427174138No Hit
ACCGTAGGGATGGCAACACTTTTCATGAAAGACAACATAATATAAA340.10046984427174138No Hit
ATCCAAGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGA340.10046984427174138No Hit
CTTTGTGGGATCGTAACTGCCTGACTTTTGTTCATCAGAAGGAGGT340.10046984427174138No Hit
CCTCTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.10046984427174138No Hit
ATCCCTGGTACTTATGGGGTTCAAGCGTCTCACCACCTCCTCCACT340.10046984427174138No Hit
GCATAAGGGGCTTCTTCTTCTTCGGGAAAACACCAAATGGCGGATG340.10046984427174138No Hit
CGTCGAGGGGGGAGGAGTCCTGGAGGGGCTGTTTGTTACGACAGGC340.10046984427174138No Hit
TTCACCGGGGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGTAT340.10046984427174138No Hit
TTTGTTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.10046984427174138No Hit
CTTAGAGGGGGGGGCGGACCGGCACATCGACATCCGGGAGTCTGAT340.10046984427174138No Hit
AGATGGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG340.10046984427174138No Hit
TGGCGCGGGGAGTCCTGCTGAAGCCAGTTTGAGAAGACCACAGCAC340.10046984427174138No Hit
TTCAAGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA340.10046984427174138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)