FastQCFastQC Report
Sat 31 Dec 2022
SRR5843435.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843435.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32331
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTACGGGGATCTTACATCGGGGACAGGGCGGGGCTCGTCACCGG470.14537131545575452No Hit
AAGTCAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA470.14537131545575452No Hit
GCGAAAGGGCGATCTATTAGCGGGATATCACAAGTGTTTAACCGCC470.14537131545575452No Hit
GCGCGGGTAGGATATTGTGAGTAATATAGATTGGCGCTAGTAGATC460.14227830874392997No Hit
ATGAACGGGGTGTAGCTGATAGGAAGCATCCTCCCAGTGCAGCTAA460.14227830874392997No Hit
GTAATAGGGCATCTTGCTGGTCCGCGGTCCAAGATGGACAAAGTCT450.1391853020321054No Hit
AGATGGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG440.13609229532028083No Hit
ACAACTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA420.12990628189663173No Hit
CACCGTGGGGTGAAGGCTTGAGTCTTTACTGGCAGGAATGAAGGGG420.12990628189663173No Hit
CTAGATGGGCTCTTGGAACGCTGTGCTCAGTATAAGAAGGACGGTG400.12372026847298259No Hit
CTATATGGGGGAAGTTTGAAGCTTAAGAGACTCTGAGGGAGCTGCT390.12062726176115801No Hit
AGTCAAGGGGACCGCTAGAAGCTGCTGGCGGAGGACAAGGAGAACT390.12062726176115801No Hit
CACAGTGGGTAACATGATTGTAAAATAGCTGTATAGTGTAAAATAA390.12062726176115801No Hit
TTATTAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA380.11753425504933346No Hit
TGAGCCGGGTCTATTTTCCCTGTGGTTCTATAGGAAACTAGGACAT380.11753425504933346No Hit
AGCATAGGGGACTCTGGCCAGGGAAGGCATGAGTGACAGAGCTGCG380.11753425504933346No Hit
CTGCCTCCCAAGTGCTGGGATTAAAGGCATGCTCCACCACGCCCGG380.11753425504933346No Hit
TTCATCGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCAC370.11444124833750889No Hit
TCATGCCGGGACAGATGGACTCTGCTGTTACATGACATTTTCCTTT370.11444124833750889No Hit
CATTGCGGGGGACTTTCCGGGTAAAGATGGCAGAGCGCGGTTACAG370.11444124833750889No Hit
TAACCAGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT370.11444124833750889No Hit
TTGACTGGGGAGGAGCAGGAAGTGGCGGTGCGAGGGCTGCTGCACA360.11134824162568432No Hit
ACACATGGGCACAGACCTGCACTGCGGCTTCGGAGGCCCCATGGCC360.11134824162568432No Hit
CGTCGAGGGGGGAGGAGTCCTGGAGGGGCTGTTTGTTACGACAGGC360.11134824162568432No Hit
CACACGGGGGGGCGGCGAGAACGTGCCCCCAGTGCCTATCGAGGAG350.10825523491385977No Hit
GGATCTTTGGTGAGCGGCTGCATGACCAGGAGAGAGGCTGGTTCCC350.10825523491385977No Hit
CCTCTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC350.10825523491385977No Hit
TTTGCAGGGGTATGCCACAACTAGATACATCAACATGATTTATCAC350.10825523491385977No Hit
TGGGATGGGTATTCCCTCCAGTTAGCACCCCGTTCATTACCTGCCA350.10825523491385977No Hit
CACGCTGGGAGACCGGGCGAGGGCGAGATAGACTTACATGTGTGGG350.10825523491385977No Hit
TTCACTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA350.10825523491385977No Hit
TCGCAGGGAAACTCATGCATATCACATAGTTAATCCAAGTCCATGA340.1051622282020352No Hit
GCATTAGGGAGTATGAGATGGTGTAAAGAGAAGTCTTTCAAGAACT340.1051622282020352No Hit
GTGGGGGATTCCGGAAGAAACAGGAGTGCGGCGTGAACATGGGGAA340.1051622282020352No Hit
TCCGTAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG340.1051622282020352No Hit
ATCCCTGGTACTTATGGGGTTCAAGCGTCTCACCACCTCCTCCACT340.1051622282020352No Hit
CCATGCGGGATACACACTGATTGTGCGGCCAGACAACACCTATGAG340.1051622282020352No Hit
TCTATTGGGGCTCTCTCACATTGGTCCTTCCCTTTCCCAGGAACCC340.1051622282020352No Hit
TCGCTCGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG340.1051622282020352No Hit
CTAAGCGGGACGTGCAGCAGCTGCAGCGCCTCAGCCTCAGCCTCAG340.1051622282020352No Hit
TTGCCAGGGGAGTGACTGCTGCAGGAAGATGGCGGAGCTGCGCGCG340.1051622282020352No Hit
CGGGCCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.1051622282020352No Hit
GTCATGGGGATTCTTCCTTGACATTACTTTTACACCAGAGTATCCT330.10206922149021064No Hit
TGACTGGGGACTGAGGGAATCATTAAGGCTGGACATGTTACAAAGT330.10206922149021064No Hit
TCCACTGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG330.10206922149021064No Hit
AAACTCGGGAGCCCTAGCACCTAGCACGATGAAGATTAAGATCATT330.10206922149021064No Hit
GCTCGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC330.10206922149021064No Hit
CTTAGAGGGGGGGGCGGACCGGCACATCGACATCCGGGAGTCTGAT330.10206922149021064No Hit
ATACAAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG330.10206922149021064No Hit
CCACTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA330.10206922149021064No Hit
GGTGTTGCTTTTTTTCCCAGCCCTCCTCACTTCCTGGGTTGACCCT330.10206922149021064No Hit
GCTAAGGGGGCAGAAACGATCGTGGCGCGCTGGCCAGAGAAGGAAC330.10206922149021064No Hit
AACTTTAGGGACGTCTCATTCTCCGCAACGCAGTTCTCCGGCCCGC330.10206922149021064No Hit
CAACCAAGGGATCTGAAGAAGGGTGATAAGCTGAATGATATGGAAC330.10206922149021064No Hit
CACCCTGGCCATGCCTGTCCCATCAAGTATAGCCCAGAAGAGATCG330.10206922149021064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)