FastQCFastQC Report
Sat 31 Dec 2022
SRR5843434.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843434.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31131
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT560.1798850020879509No Hit
GCTATTGGGGATTGACAACCAGAGAACTTTATCACAGATGTCACAC540.17346053772766695No Hit
TTGCTGGGGGTCTCCCACCCGGCAAAGATGCTCATCACCATAACCC540.17346053772766695No Hit
GTTAGCGGGATTTCGTCTCATATTAAAAGAGAAATCTCAATCACAG530.17024830554752496No Hit
TGGCACGGGATAATCATACTTATTACTATTGGCATTGTTTTATTAG500.16061160900709903No Hit
AATAGCGGGGCAAATTAGCAAGGACACCATTTTCCAACTCAACTGG470.15097491246667308No Hit
CCGAGGGGGGTCAGGGTCACAGGCCTCCTCCAGCTCTGAAGTGAAT470.15097491246667308No Hit
CACTATGGGGTTTATCCACTGGCTCTCCATTTGTCCCTTTGGAGAG460.1477626802865311No Hit
CAACTAGGGAGCCAGGCGTGGTGGCACATGCCTTTAATCCCAGCAC450.14455044810638912No Hit
CACTATGGGACAGTGGTTCATCAAGTCTGGGAAATTGACTTCAAGA440.14133821592624715No Hit
CTGTTGGGGGGAACGGGGTTGCTATGGCTTCCCAATGGCATGAAAC440.14133821592624715No Hit
CTTGATGGGGATATTAAAAGGCTTTTCTCACCATTTCTTGCTAGCA440.14133821592624715No Hit
TTGGCTGATTTGGACTCGGCTTTTGCTGGCATCCTCTGCTTGGTGA430.13812598374610516No Hit
CTAGCTGGGGGGTGCAGACCAGGCTCTGAATCTCACGCTGGGCAGA430.13812598374610516No Hit
TGACTAGGGATGGGGCAGCTAGGATCCATTTGTCTGTTGGAAATGT420.1349137515659632No Hit
CCGCATGGGAATTATTCTCAGCCCTGATCTATCTGTTAAAGGAACG410.1317015193858212No Hit
CGTATGGGGATTGTATTGTCTCACACATGCTCTATATAAATGGGAA410.1317015193858212No Hit
AAGAATGGGACGTGCTGAGCTCGCGAGTGCGCACAGGCCGCAGCAT410.1317015193858212No Hit
TTGTCCGGGATGAACTCGCTTTATACCTGAAGAGGTCTGTAACCAA410.1317015193858212No Hit
AGCTCGGGCCTGTGACTAAATTTTTACTTTCTCAGTCCTTTTTCCT410.1317015193858212No Hit
CAATCTGGGGACTGGCAAGGCGACCAACCTCACCCGAGAGCAGTGC400.1284892872056792No Hit
CGTCTGGGGGGGAATTCAGATGCCTGGATAGGTTCAAGTTACGTTT400.1284892872056792No Hit
TACCTCGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG400.1284892872056792No Hit
CAACGCGGGGAGTTGTCCCACCTCAATACCTATCTCATCTGTGAGC400.1284892872056792No Hit
AATTCTGGGTCTACAACCGGGATGACCCACCAAACTCATGCATATC390.12527705502553724No Hit
GTGCTGGGATTTCATCATCTACCCAACTCCAGAAACCAAAGGGAGT390.12527705502553724No Hit
TAATGTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA390.12527705502553724No Hit
AGCACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC390.12527705502553724No Hit
TACTAGGGGATAGACTTACAACCCATGTGGGCTTGTCAGGAGACTT380.12206482284539526No Hit
CTAAATGGGGCCGGCTGATCGTTTTTAGGATATTGTGAGTAATATA380.12206482284539526No Hit
GCATTAGGTATGCCACAACTAGATACATCAACATGATTTATCACAA380.12206482284539526No Hit
CGCTCTGGGATGGGCTTGTGGAAACCACAGGTACAGGTGGGATTTC380.12206482284539526No Hit
AAACTTGGGGTCTCTGCTCCTCCCTGTTCCAGAGACAGCCGCATCT380.12206482284539526No Hit
TAGCCGGGGAGGCTAAGTGCCGCTGTGTCCTGGCAGCACCCCAGAC380.12206482284539526No Hit
ATCTGCGGGGGAGGTCTCCAGCTTAGGAAAGGGGGTGGGGAAAAGG380.12206482284539526No Hit
TACAGGTGGGGTTTGCAGCGTCAGTAGTAGAAAAATTCTAACTTGC380.12206482284539526No Hit
TGCAGTGGGAGAGGCGGTGGACAGCGAGCGGGCATGAGCGCGTCCC380.12206482284539526No Hit
CGTTCGGGAACTGGGGCTCAAGGAAGAAAGGCTGTGTACCCTGACT380.12206482284539526No Hit
CTAACTGGGAGAAATCCCAGTCTTTCTCCCATCAATGCTATGTAGC380.12206482284539526No Hit
AAACGCGGGGAAGACGCCGCCGAGCAGCCACTGTGGATTTCATCGG380.12206482284539526No Hit
TGGTCAGGGGTAATAAAACCCTTTAAGAATGTCCGACTTCATCTGA380.12206482284539526No Hit
GTTCACGGGAGTGTCTTAGTTTTCAGTACTCACTTCTCTACCAGGA380.12206482284539526No Hit
AATCATGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT380.12206482284539526No Hit
TGGCCATGGGATCCACGTGAAGTGTGTGCTCGGGCTTCTAGCCAGC380.12206482284539526No Hit
GCTGTGGGCAGCAAGTACTCAACATTGAGTGTCTGCGAGACTTCCT370.11885259066525329No Hit
TCCACAGGGGAGTTCACAGGACCACAGAATACTGGCTATGGTGCAA370.11885259066525329No Hit
TTAACGCGGGGGTGGTATTTTGGTTGCTACTTCTGTCTGCCCATCC370.11885259066525329No Hit
ACGCAAGGGAGGCCGGTTCGCCGGCGGCTTCGGCGCAGAGGCAGGG370.11885259066525329No Hit
TCGAGCGGGATAGCTAGTACTTTGTATGAAGATGGTACCTTGGATG370.11885259066525329No Hit
ACGCTGAGGGATTGATTAGGTTTTTCTAGTGCCTTTGAGAGTGCAT370.11885259066525329No Hit
ACTACTGGGATATTTCAAAAGAAAACTTTTTTGACACTCTCAAGAC370.11885259066525329No Hit
CGACCTAGGGGGTCTGGGTCCAGATACACATGGCACTCCACACCTC370.11885259066525329No Hit
AACATGGGGTTCCCAGGGTATAGTTTCCCAGTACCTGACAGAAGTA370.11885259066525329No Hit
TGCACTGGGGGCCAGGGAAGCAGCGAAGGAGCCCAAGGGAGATAGC370.11885259066525329No Hit
TAATTAGGGGGCCACATCCAGTATGTGGCGTCCTACAAGGTAGCCC370.11885259066525329No Hit
TCACAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC360.11564035848511131No Hit
TTCTCTAGGGGATATTAGCAACTTAGAGTTGGTGAGTTTAATCTTC360.11564035848511131No Hit
CTCAAAGGGGCAGCACACGAGGCGTTCCTGAACACCATCACCTCCC360.11564035848511131No Hit
CTATTTGGGGCCGGCCTGGTCGGGGGAAGCCATCCTGAGGAGGGCC360.11564035848511131No Hit
GTCTCAGGGAATAAGAGGTGATGGATAAATTCTGAGATGGCGTAAG360.11564035848511131No Hit
AATCTGGGGATACTCAAGGGCCAGCAAGATGATCCAGCGGGTACAG360.11564035848511131No Hit
TCTCTTGGGGAATACTACTGGATAAATCTGGTTGGTTGGTTGGCTG360.11564035848511131No Hit
CTCTTAGGGAGGGCCTGTGGGGCAGACTCCTGCACCCCAGGAAGAG360.11564035848511131No Hit
TAGAACGGGGAACACCTTCAGCGTCATGCCCTCACCCAAGGTCTCT360.11564035848511131No Hit
ACACATGGGATTGCCAACCATCTTTCGAGGTAAGACGTGGGACTTC360.11564035848511131No Hit
ACGAACGGGATTAAGGAAGTTTTCCATTTAAAAGAAAACTTTCTTT360.11564035848511131No Hit
TACGCACGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCA360.11564035848511131No Hit
TTTGCAGGGGATGATGGTGTGCAGTGGACTGTATATGAGGAGCAAG350.11242812630496933No Hit
GTTTCTGGGGAAACATGGGTATGTGGCAGACAGTCTCCCCTCCCTC350.11242812630496933No Hit
CATTCCGGGAGGTGATCTCTCCCGTGTTTCTGGAATGCTTTCTTAG350.11242812630496933No Hit
CGTGCCGGGGGAGAAGGCCGGGGCCCACTTGAAGGGTGGAGCCAAA350.11242812630496933No Hit
CTCTTAGGGGGGGCGCGAAGCTGTCCGGGTTTCTGTCGGGCGGTGT350.11242812630496933No Hit
ACTACTGGGAGATCCCCACAGCCAGTTGGACCCTAACTCAATGTAC350.11242812630496933No Hit
AGCCAAGGGGAGGGCCCGGCGTTTTCATGGCGGCGTCCTGGGGGCA350.11242812630496933No Hit
TCAAAAGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCA350.11242812630496933No Hit
TCTTTCGGGGTGACTCTTACCCAGTCATATGTCTCCCTTTTCCTGT350.11242812630496933No Hit
TCAACTGGGGTGGATAGCACACCCAGACTCAGTGTCACTGGAGAAG350.11242812630496933No Hit
CACAGTGGGGGGGCTGCAAGGAAGGGGGCTGACATTGTAAATGAGA350.11242812630496933No Hit
TTGGTGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA350.11242812630496933No Hit
CATCTTGGGAATAATAATTGGAGGCTTTGGAAACTGACTTGTCCCA350.11242812630496933No Hit
TGCATCGGGTCCATAGATGTGACATGTCTCACCTATCCTTCCCAGC350.11242812630496933No Hit
TTAAATGGGACTGAAATAAAGAGTTAGCACCAATTGTATATTATGG350.11242812630496933No Hit
ACAACGGGGCAGCCTGGGGAATCTATATAACCGGCTCATCCATTAT340.10921589412482735No Hit
TGCAATGGGTAGGCTTTATTGTATGAGCCCACCACATATTCACAGT340.10921589412482735No Hit
ACTGTGGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC340.10921589412482735No Hit
GAACAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA340.10921589412482735No Hit
AATCATGGGGTTTCGCCACTGGATAAATAAGAAGCCGTGTTTTCTC340.10921589412482735No Hit
GTACCTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA340.10921589412482735No Hit
ACCTTGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.10921589412482735No Hit
TCAGGTGGGGGCTACCACAGGCTTTTGTCTCAGTTTATCTGCCCTG340.10921589412482735No Hit
AAATCAGGGAATTATTTCACATGTAGTTACTTACTACTCCGGAAAA340.10921589412482735No Hit
TAAGCAGGGGGAAGCATTCTGGGAAGTGTTTCCCAGGTGGTTTCTG340.10921589412482735No Hit
TAAAAAGGGAGCCAAGGACTGAGCTGAGCAAGCGGAGCGCGGTGCC340.10921589412482735No Hit
TGAATTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA340.10921589412482735No Hit
TCTTGCGGGTGATCCCGCTGGAGGAGGGGACCCAATTCTCTACCAG340.10921589412482735No Hit
GCATATGGGGAATAATGTGTGTGTTTAGTTTAAGTCCCTGGCCCTT330.10600366194468537No Hit
TCATATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA330.10600366194468537No Hit
AAATACGGGCTGATGGGGGGGTGACACAATTTCACTGAAAATCTCC330.10600366194468537No Hit
TTAAGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC330.10600366194468537No Hit
ACTTGCGGGCACAACTAGATACATCAACATGATTTATCACAATTAT330.10600366194468537No Hit
CTGACAGGGACAACAAGCTAGCAGGCTACCTGCACACACTGGTGCA330.10600366194468537No Hit
TAGGTGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT330.10600366194468537No Hit
ATTTAGGGGAGAGGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGG330.10600366194468537No Hit
AACAACGGGGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTTGGAT330.10600366194468537No Hit
GTCAATGGGAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGGAGCT330.10600366194468537No Hit
ACTTCCGGGACATTCAGTAATTCTGTAAGGACAGTAAAGTCCTCAG330.10600366194468537No Hit
ATCTCTGGGACCACCATCCCTGGCTCATCAGTTTTCCTGGGACAGC330.10600366194468537No Hit
TATTGAGGGAGGCGGAAGTAGAGCAGGAGGTTGGAGGTATGGCTCT330.10600366194468537No Hit
TATTCTGGGGACTAATTTAGATAGCAATTTTCATTCTTCAAGATTG330.10600366194468537No Hit
TAACCGGGATCCAACCAAGTGCCCTCCCCAAAGTGCGGCCAATGCT320.10279142976454339No Hit
TATAGGGGGAGAACACAGACTATGTGAACGCATCCTTCATTGATGG320.10279142976454339No Hit
CAACAGGGGGTTACAAACCTCCTGATACTGCTTTGTTGACACCACA320.10279142976454339No Hit
CAGCGTGGGCTACATAAGATCCTCAAAAAAAGCCAAAAAAGGGGGC320.10279142976454339No Hit
TTGGCTCGGGGTTTGACCTGGAGCATGGCTCCTGGACTAAGCTGCC320.10279142976454339No Hit
GGTCTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT320.10279142976454339No Hit
GTGGCTGGGCCCCCAGAAATCTACTACACCTCTCGCCCGCCGGCCC320.10279142976454339No Hit
GGTTCCGGGGGTTCAGTGTCCATGTCAGGTTTATTCTACCTTAAGT320.10279142976454339No Hit
CCCCACTACGCCCTACTTCTCCCGGGATGCCCAGAAGCACGATGTG320.10279142976454339No Hit
TAAACTGGGACACACAAGTTGGTGGGACCGAGTCGAGAGTCTGCAC320.10279142976454339No Hit
TTTGTTGGGGTCATGGGAGAGTTCCACTCTCCTCCCTTTGAGGCTT320.10279142976454339No Hit
CGCTATGGGGTCCTTGGCACCGTCCACCATCCCCCTACTGCCTTGA320.10279142976454339No Hit
CAACCTGGGACTGGCACCTTCACCAAAATCACTAACAACCATAAAA320.10279142976454339No Hit
AATGGTGGGGACAGTTTCCATTGGAAACAGCTTCGTTAGCAAATGA320.10279142976454339No Hit
AAAGCAGGGAACAGTAGTGTTTTGTACTATATTATAAAATACTGTC320.10279142976454339No Hit
TTAAAAGGGGAGCATCAGTAGACCTAACAATTTTCTCCCTCCATTT320.10279142976454339No Hit
ACGCTTGGGACAGGCAGCCGTGTTGTCTCAGCTTGGCTCTGCTGAG320.10279142976454339No Hit
TATTGTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT320.10279142976454339No Hit
GAATCTGGGGACACACTGCCTTTCTCCTCCTCCTTTGCCGCTGGCA320.10279142976454339No Hit
GTTTGCGGGACAATGAGATGGGAGATGTGGATCAGTTCCCCCCACC320.10279142976454339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)