FastQCFastQC Report
Sat 31 Dec 2022
SRR5843433.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843433.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29772
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGCAGGGGATGATGGTGTGCAGTGGACTGTATATGAGGAGCAAG520.17466075507187961No Hit
GCTGTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT470.1578664516995835No Hit
CGTATGGGGATTGTATTGTCTCACACATGCTCTATATAAATGGGAA460.1545075910251243No Hit
CTTGATGGGGATATTAAAAGGCTTTTCTCACCATTTCTTGCTAGCA460.1545075910251243No Hit
ACGCTTGGGACAGGCAGCCGTGTTGTCTCAGCTTGGCTCTGCTGAG450.15114873035066506No Hit
AAACTTGGGGTCTCTGCTCCTCCCTGTTCCAGAGACAGCCGCATCT440.14778986967620583No Hit
TGCACTGGGGGCCAGGGAAGCAGCGAAGGAGCCCAAGGGAGATAGC430.1444310090017466No Hit
GCCATTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC430.1444310090017466No Hit
TGCATCGGGTCCATAGATGTGACATGTCTCACCTATCCTTCCCAGC430.1444310090017466No Hit
CGTCTGGGGGGGAATTCAGATGCCTGGATAGGTTCAAGTTACGTTT420.14107214832728737No Hit
AGAACTGGGGTCTAAACTTAACTTAAATGGTTTTTTACAGGAGTTA420.14107214832728737No Hit
TTTGTTGGGGTCATGGGAGAGTTCCACTCTCCTCCCTTTGAGGCTT420.14107214832728737No Hit
CCGAGGGGGGTCAGGGTCACAGGCCTCCTCCAGCTCTGAAGTGAAT420.14107214832728737No Hit
AACCCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC410.13771328765282817No Hit
AACATGGGGTTCCCAGGGTATAGTTTCCCAGTACCTGACAGAAGTA410.13771328765282817No Hit
CTGTTGGGGGGAACGGGGTTGCTATGGCTTCCCAATGGCATGAAAC410.13771328765282817No Hit
CAACTAGGGAGCCAGGCGTGGTGGCACATGCCTTTAATCCCAGCAC410.13771328765282817No Hit
CTGACAGGGACAACAAGCTAGCAGGCTACCTGCACACACTGGTGCA400.13435442697836894No Hit
AAACGCGGGGAAGACGCCGCCGAGCAGCCACTGTGGATTTCATCGG400.13435442697836894No Hit
ACATGGGGCTGCACACTTCCCCGGTCCCAGAGGAATCAGACGATGT390.1309955663039097No Hit
TAACCGGGATCCAACCAAGTGCCCTCCCCAAAGTGCGGCCAATGCT390.1309955663039097No Hit
TCTTCAGGGGAGAGCCAAACCTGCTGCTGACCAGCCCCAGGTCAGA390.1309955663039097No Hit
TCTGCAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC390.1309955663039097No Hit
AACAACGGGGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTTGGAT390.1309955663039097No Hit
AACTATGGGATAACCCAAGCTCGTCACATACTCATAGTTCTGCCTC390.1309955663039097No Hit
AGAGCCGGGCTGCCCTGACTTTGTCAGCATCAGGGCAATCCCCACA390.1309955663039097No Hit
CATAAAGGGGAACTGGATAAAAGAAAAGAAAAACAGAAAAGGGAAG390.1309955663039097No Hit
CTCTTAGGGAGGGCCTGTGGGGCAGACTCCTGCACCCCAGGAAGAG390.1309955663039097No Hit
GCACCTGGGGGGAATTCACTGTCCTTTCATCCATAAGCGGAGAAAG380.12763670562945048No Hit
ACTACTGGGATATTTCAAAAGAAAACTTTTTTGACACTCTCAAGAC380.12763670562945048No Hit
TTAAATGGGACTGAAATAAAGAGTTAGCACCAATTGTATATTATGG380.12763670562945048No Hit
TAGGTGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT370.12427784495499127No Hit
CTCATAGGGAGTGATGTAGAGGAGAACAACTTCGAGGGCAGAGTGA370.12427784495499127No Hit
AGTCAAGGGACTTTGTAGTGACCAGAAAAAATCCATTCTCCTTTTT370.12427784495499127No Hit
TGGCCAGAGGTGCTGCTCATCCACACACACAGGATGGACCCTATGG370.12427784495499127No Hit
TATTGAGGGAGGCGGAAGTAGAGCAGGAGGTTGGAGGTATGGCTCT370.12427784495499127No Hit
CTCGGGGATTGTAGACAGAAAAGACAATAAGAACAGGGAGCTAGTG360.12091898428053204No Hit
CACTATGGGGTTTATCCACTGGCTCTCCATTTGTCCCTTTGGAGAG360.12091898428053204No Hit
AATCTGGGGATACTCAAGGGCCAGCAAGATGATCCAGCGGGTACAG360.12091898428053204No Hit
TACCTCGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG360.12091898428053204No Hit
AGCACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC360.12091898428053204No Hit
TCATATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA350.1175601236060728No Hit
TTAAGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC350.1175601236060728No Hit
ACTGTGGGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC350.1175601236060728No Hit
TCGAGCGGGATAGCTAGTACTTTGTATGAAGATGGTACCTTGGATG350.1175601236060728No Hit
TGCAGTGGGAGAGGCGGTGGACAGCGAGCGGGCATGAGCGCGTCCC350.1175601236060728No Hit
TCTACTGGGGGGGCTGGTCTGCGATGGCGACTGCCTCGGCTCGCTG350.1175601236060728No Hit
CTAAAGGGGTAAGGATTTCTGGAAGGCTGTGATCCAAGTCAGGCAA350.1175601236060728No Hit
ACACATGGGATTGCCAACCATCTTTCGAGGTAAGACGTGGGACTTC350.1175601236060728No Hit
GTTCACGGGAGTGTCTTAGTTTTCAGTACTCACTTCTCTACCAGGA350.1175601236060728No Hit
AAATCAGGGAATTATTTCACATGTAGTTACTTACTACTCCGGAAAA350.1175601236060728No Hit
TGAACTGGGACAACCAAAGTCACTCACAGCGGAGTCAAGCAACAGT350.1175601236060728No Hit
AGTGATGGGCGATCTGACGTTGGGGTCTTCTGCTTGTATGGCAATG350.1175601236060728No Hit
GTTAGCGGGATTTCGTCTCATATTAAAAGAGAAATCTCAATCACAG350.1175601236060728No Hit
TCGACACGGGATGACAAACATACGAAAAACACACCCATTATTTAAA340.1142012629316136No Hit
CTATCATAGGGGTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGG340.1142012629316136No Hit
TAACGGGGATGGGTAAAGGTTACTTCATGTTCCCACTCTACCAGGG340.1142012629316136No Hit
CTATTTGGGGCCGGCCTGGTCGGGGGAAGCCATCCTGAGGAGGGCC340.1142012629316136No Hit
CATTAAGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG340.1142012629316136No Hit
TGTAATGGGACCCTACCCTCGCATCCACTTCCCTCTGGCCACTTAT340.1142012629316136No Hit
GCTGCTGGGCGGCCCTAGCAATCGTTCACCTCCTCTTCCTCCACGA340.1142012629316136No Hit
TCTAGCAGGGGAGCTCTGCCGAGGAGGTCCCGTTCTCCGCGCCACC340.1142012629316136No Hit
GCTATTGGGGATTGACAACCAGAGAACTTTATCACAGATGTCACAC340.1142012629316136No Hit
ATATTAGGGTCACACTGAGCGAAAGACAGAACCAGCCACAGGCTTC340.1142012629316136No Hit
TCTTTCGGGGTGACTCTTACCCAGTCATATGTCTCCCTTTTCCTGT340.1142012629316136No Hit
TAAACTGGGACACACAAGTTGGTGGGACCGAGTCGAGAGTCTGCAC340.1142012629316136No Hit
ATCTTAGGGACTGATCTTGAAGACAGTTACACATTAACACCTTTTG340.1142012629316136No Hit
AACAACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC340.1142012629316136No Hit
CCAGCTGGGAGGACATAAACAAATAGGAGGAAAAGAGCCAAAGAAA340.1142012629316136No Hit
GTTTGCGGGACAATGAGATGGGAGATGTGGATCAGTTCCCCCCACC340.1142012629316136No Hit
CAACGCGGGGAGTTGTCCCACCTCAATACCTATCTCATCTGTGAGC340.1142012629316136No Hit
TGGCACGGGATAATCATACTTATTACTATTGGCATTGTTTTATTAG340.1142012629316136No Hit
TTAACGCGGGGGTGGTATTTTGGTTGCTACTTCTGTCTGCCCATCC330.11084240225715439No Hit
ACATTTGGGTGAGGAAGTAAGCAGGAAATACTGACAGACAGCTGCC330.11084240225715439No Hit
TTTTGTGGGGGCTGCTTTAGGTGTCTCTTTTCCTCCCTCTCTATCT330.11084240225715439No Hit
ATCCATGGGAAGGCGCTGGAGGACCTGCACAAGCAAAGCCAGCTGG330.11084240225715439No Hit
AAGAATGGGACGTGCTGAGCTCGCGAGTGCGCACAGGCCGCAGCAT330.11084240225715439No Hit
TGCACAGGGAATTTTAAAGATCGTCCATCGGAGGATAATTAACAGA330.11084240225715439No Hit
ACTATTGGGGATGTGGAAAGGGCAGGTCCAAAAGTCCTTTCAAATT330.11084240225715439No Hit
CAACCTGGGACTGGCACCTTCACCAAAATCACTAACAACCATAAAA330.11084240225715439No Hit
TAGAACGGGGAACACCTTCAGCGTCATGCCCTCACCCAAGGTCTCT330.11084240225715439No Hit
TATCCAGGGATGTTGGTTTGTTCCTGGCTAAAGGGTCATTTTTGTG330.11084240225715439No Hit
AGCAGAGGGGCCTCTGGCTCTTTTCCTTCATGCTACTAGGTGGCTG330.11084240225715439No Hit
TATAGGGGGAGAACACAGACTATGTGAACGCATCCTTCATTGATGG320.10748354158269516No Hit
ATCTGCGGGGGAGGTCTCCAGCTTAGGAAAGGGGGTGGGGAAAAGG320.10748354158269516No Hit
ACTGCTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGG320.10748354158269516No Hit
AATAGCGGGGCAAATTAGCAAGGACACCATTTTCCAACTCAACTGG320.10748354158269516No Hit
GTGGCTGGGCCCCCAGAAATCTACTACACCTCTCGCCCGCCGGCCC320.10748354158269516No Hit
TTGTCCGGGATGAACTCGCTTTATACCTGAAGAGGTCTGTAACCAA320.10748354158269516No Hit
AATCATGGGGTTTCGCCACTGGATAAATAAGAAGCCGTGTTTTCTC320.10748354158269516No Hit
TAATTAGGGGGCCACATCCAGTATGTGGCGTCCTACAAGGTAGCCC320.10748354158269516No Hit
AAGATAGGGGCTGACAGGATGCAGAAGGAGATCACAGCCCTAGCAC320.10748354158269516No Hit
TTTTATGGGATCACCAAGGTGTGAGCTGCAGGAGCTAAAACTTGTA320.10748354158269516No Hit
TTGGCTGATTTGGACTCGGCTTTTGCTGGCATCCTCTGCTTGGTGA310.10412468090823593No Hit
TGATTTGGGATTTTTCAAGTTGCTGGTTGTAGTGATGTTTTTGTAA310.10412468090823593No Hit
CCGCATGGGAATTATTCTCAGCCCTGATCTATCTGTTAAAGGAACG310.10412468090823593No Hit
GCCATTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT310.10412468090823593No Hit
TGACTAGGGATGGGGCAGCTAGGATCCATTTGTCTGTTGGAAATGT310.10412468090823593No Hit
AGGCATGGGATCGGCTTCCCACACAAGAGGCCTCATTTCTTATATC310.10412468090823593No Hit
CGCTCTGGGATGGGCTTGTGGAAACCACAGGTACAGGTGGGATTTC310.10412468090823593No Hit
GTCCATGGGGTGGCAAGCTCACCAAGCCCAAGCCTCAAGCGGAGTC310.10412468090823593No Hit
TCACAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC310.10412468090823593No Hit
TAGCCGGGGAGGCTAAGTGCCGCTGTGTCCTGGCAGCACCCCAGAC310.10412468090823593No Hit
TTAGTAGGGTCCATTGCTGTCATGTATGTCATGTACTTCCTGGCCG310.10412468090823593No Hit
TCAAAAGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCA310.10412468090823593No Hit
TTTCCTGGGGACTACTAGGAGCTGCGACACGGCCCAGCCTCCTGGC310.10412468090823593No Hit
TACTCCTGGGGGCTTTGGAAACTGACTTGTCCCACTAATAATCGGA310.10412468090823593No Hit
CTAACTGGGAGAAATCCCAGTCTTTCTCCCATCAATGCTATGTAGC310.10412468090823593No Hit
AGCTCAGGGAGTTTGTCTACTGCAAATGCAAAGAAAGACCCCAGCT310.10412468090823593No Hit
ACAGCCGGGGAGTCCTGCTGAAGCCAGTTTGAGAAGACCACAGCAC310.10412468090823593No Hit
AAATGAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT310.10412468090823593No Hit
AAAGCAGGGAACAGTAGTGTTTTGTACTATATTATAAAATACTGTC310.10412468090823593No Hit
ACGAACGGGATTAAGGAAGTTTTCCATTTAAAAGAAAACTTTCTTT310.10412468090823593No Hit
AATATTGGGAGAGTGGAGTGTGCTTGTTTATGTCCCTACCAAAAAA310.10412468090823593No Hit
CAATGTGGGACTGTTCTTTTTACTAAAACTCTGTTATCTTTATTTT310.10412468090823593No Hit
CATAACGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC310.10412468090823593No Hit
AATCCTGGGACACACATGCAAAATAATTTCTGTCTAAAATCTTTTG310.10412468090823593No Hit
GTACATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC300.1007658202337767No Hit
AAATACGGGCTGATGGGGGGGTGACACAATTTCACTGAAAATCTCC300.1007658202337767No Hit
ACAACGGGGCAGCCTGGGGAATCTATATAACCGGCTCATCCATTAT300.1007658202337767No Hit
TTTTGCGGGACTTCCGGTCCGTGCCCTTGGGGCTCCGTGGCCTGCG300.1007658202337767No Hit
GTCAACGGGATCCCAAGTCCCGCTTGGTCCGCAGCCTCATGTCTCC300.1007658202337767No Hit
TTCGCAGGGACCGAAAAGATACTATTGTCTCTCCCATCGGATTGTT300.1007658202337767No Hit
AAAACAGGGATTACCTCAGATGCTGATCCCAAAGTTGATCTTAGTG300.1007658202337767No Hit
GTCAATAGGGAGGACGATTTCATGGCTAAGGAAATGGTACCATTAT300.1007658202337767No Hit
CATCGAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT300.1007658202337767No Hit
AATTCTGGGTCTACAACCGGGATGACCCACCAAACTCATGCATATC300.1007658202337767No Hit
CGTCTAGGGGGTGGTGCGTCTGGTAGCAGGAGAAGATGGCGGTCTC300.1007658202337767No Hit
GGTCTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT300.1007658202337767No Hit
AGTGTAGGGATTTATAGGTTTTATAAATTTTAGAATCAATTTCTCT300.1007658202337767No Hit
TAATAAGGGAATGCTCAAAGACAAGCCTTTGCCTTTGAAGAAAAAT300.1007658202337767No Hit
GGTTCCCCAGTTCCATGACAGAGGAGATCCTGAACCCCAAGATCCG300.1007658202337767No Hit
ATCCGGGGCCCGCCCTCCGGCCCCAAGCTGGGCGAACGTGGCAGCG300.1007658202337767No Hit
AGTCCTGGGCTTCCGATCTAGCCTAGGGGGGAATTCAGATAAAACG300.1007658202337767No Hit
GTGCTGGGATTTCATCATCTACCCAACTCCAGAAACCAAAGGGAGT300.1007658202337767No Hit
ACATATGGGAAAGAGGAATCAAATAATAGTAAAGGCAAGAGTGGGA300.1007658202337767No Hit
TAGCTGGGGAGCACACATGGGTCCTGGAGATGGAATACAGATCCTA300.1007658202337767No Hit
TAATAAGGGACCCAAACCACAAATGATATTTGAATTAATGAACTCA300.1007658202337767No Hit
TATTCTGGGGACTAATTTAGATAGCAATTTTCATTCTTCAAGATTG300.1007658202337767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)