FastQCFastQC Report
Sat 31 Dec 2022
SRR5843432.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843432.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41495
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTCAGGGCTAGGCACGGGGAGCTACGAGACTGCCAATCTCTCTC620.14941559224002893No Hit
CTCCCCGGGTCCAGTGGATTTTTTTAACTATTATTCAAAAGCAAAA560.13495601879744545No Hit
ATAAAAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT530.12772623207615375No Hit
CGCTCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC480.11567658754066755No Hit
CCGTCCGGGGACATAGGCGCGGGCCGGCGTGTCCTTGGGCTAGAGC470.11326665863357031No Hit
GGTTCGGGGCTACAGAAGGCCAAGGAATGGGAAATGAAGAAGACCT470.11326665863357031No Hit
GCTTGGGACTCCTTTTTTTCCATCCCACTTGAGATTTTTGAGTCTG460.11085672972647306No Hit
CGACCTGGGGGCCAAACCGAGAGAGGAGACGTTTGCAGAGATGCTA460.11085672972647306No Hit
TATGCTGGGACCGAAGAGATGTGCTAGAGAGAAGCCGCCTCCACAG450.10844680081937583No Hit
ATACAGGGAGGAGAGAATAGGGCACAGGTATATTGAAGTGTTTAAG440.10603687191227859No Hit
TACATAGGGGCTTTTTTCAAGGGGACACTCAGGATGTTCAAGATTT440.10603687191227859No Hit
CACGCACGGGGGAACGCGAGGAAGTCGGAGAGCTTGCAGTTGCAGC440.10603687191227859No Hit
CTTAACGGGGGTATGCGGGGCCTCTCAGCCCCTAGGATTGAAGGAA440.10603687191227859No Hit
CTAAAAGGGGATCTGTGCGTGTGGGCAAATACACTGAGGTTTAAAT430.10362694300518134No Hit
TCATATGGCTCTGCTGGTAGAGACCCAAATGAAGAAACTAGAGATC430.10362694300518134No Hit
TTACGCGGGGTGGACAGCAGGCTGGTCGCGTTTGTATTTTCACTTC430.10362694300518134No Hit
ACTTCAAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTT420.1012170140980841No Hit
GCTCCCGGGACTGCGAAAACGAGAAGGATCCCAAGCGCCGCTCGTG420.1012170140980841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)