FastQCFastQC Report
Sat 31 Dec 2022
SRR5843431.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843431.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40049
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.1273440035955954No Hit
CACGCACGGGGGAACGCGAGGAAGTCGGAGAGCTTGCAGTTGCAGC490.12235012110165047No Hit
TCGTCTGGGGAGACGCTGAGCAGGGTCAGGCTCCTGCCGACCCCTT480.11985317985467803No Hit
CCTTGTGGGGAGCTGAAGTGCAAACTTAAGGTTTTTTGGAGCAACT480.11985317985467803No Hit
CTCCCCGGGTCCAGTGGATTTTTTTAACTATTATTCAAAAGCAAAA480.11985317985467803No Hit
GTACTGGGGGGGCTGCTGCAGGCAGGACTGAACACCACCGGAGCAG480.11985317985467803No Hit
TTACGCGGGGTGGACAGCAGGCTGGTCGCGTTTGTATTTTCACTTC470.11735623860770557No Hit
TCACCAGAGCTCCTTGGCCTCCTGCCCTGCCCTCATACCTTCCACA470.11735623860770557No Hit
TCATATGGCTCTGCTGGTAGAGACCCAAATGAAGAAACTAGAGATC460.1148592973607331No Hit
TATATCGGGGCTCACTCGCGCGCTCGCATCCAGCCACCTTATGATG460.1148592973607331No Hit
GTCATGGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCT460.1148592973607331No Hit
TGTGATGGGGACTGTCGAGTCGCGTCCACCCGCGAGCACAGCTTCT450.11236235611376065No Hit
CTTCCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT450.11236235611376065No Hit
CTAAAAGGGGATCTGTGCGTGTGGGCAAATACACTGAGGTTTAAAT440.10986541486678819No Hit
GCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGG440.10986541486678819No Hit
TCTTGAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT440.10986541486678819No Hit
CTCTCCTGCGGCACGTTTGGGTTGGCACAGCTACCATGAAATGTTT430.10736847361981572No Hit
CTAGGATGGGGAGGCTGCAGAAACGATGGCGGCTCTGACCGATGTG430.10736847361981572No Hit
CACTCCGGGCCGGCAAGGTTCCAGCATTTGAGGGTGATGATGGATT420.10487153237284327No Hit
GCCACAGGGGGAACTCCCACCGTGGAAAAAGATGGCGCCTTCGCGG420.10487153237284327No Hit
ACGCCTGCAGGCCATGTTGAGTAAGAAAGATAAGAAGCAACCGAGA420.10487153237284327No Hit
AAAACCGGGTCACCCACTACCATGAACACGGCTCCCTCTATGACTT420.10487153237284327No Hit
CTTTCAGGGCTAGGCACGGGGAGCTACGAGACTGCCAATCTCTCTC410.1023745911258708No Hit
CGTGCTGGGAGGGCTGAAGTTCTCAACTACTGCCAGCGCCTCTGTG410.1023745911258708No Hit
AGGCCGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG410.1023745911258708No Hit
CATCATAGGGAAGGTGACTTGGAAAGTACTAGAAGGACATGCGGAA410.1023745911258708No Hit
GCAATGGGGCTGGGAGGTTGTGTTAATAAAGGAAAATTATTTCATA410.1023745911258708No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)